View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_21 (Length: 364)
Name: NF9223_low_21
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 351
Target Start/End: Complemental strand, 13960369 - 13960032
Alignment:
| Q |
14 |
agagactaaaaagagatgaatggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaagg |
113 |
Q |
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| T |
13960369 |
agagactaaaaagagatgaatggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaagg |
13960270 |
T |
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| Q |
114 |
acaagattgggaagatgttgcaaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatg |
213 |
Q |
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| T |
13960269 |
acaagattgggaagatgttgcaaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatg |
13960170 |
T |
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| Q |
214 |
aagaaaaggtatagatcagaatcagctagttcagatgtttcatcttggcctttatattcaagacttgatcttcttctacgtgggacaggacaattatcta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13960169 |
aagaaaaggtatagatcagaatcagctagttcagatgtttcatcttggcctttatattctagacttgatcttcttctacgtgggacaggacaattatcta |
13960070 |
T |
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| Q |
314 |
caacaacactaaacaataatcaagcaggtttggttttg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
13960069 |
caacaacactaaacaataatcaagcaggtttggttttg |
13960032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 4028752 - 4029089
Alignment:
| Q |
14 |
agagactaaaaagagatgaatggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaagg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028752 |
agagactaaaaagagatgaatggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaagg |
4028851 |
T |
|
| Q |
114 |
acaagattgggaagatgttgcaaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028852 |
acaagattgggaagatgttgcaaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatg |
4028951 |
T |
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| Q |
214 |
aagaaaaggtatagatcagaatcagctagttcagatgtttcatcttggcctttatattcaagacttgatcttcttctacgtgggacaggacaattatcta |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4028952 |
aagaaaaggtatagatcagaatcagctagttcagatgtttcatcttggcctttgtattctagacttgatcttcttctacgtgggacaggacaattatcta |
4029051 |
T |
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| Q |
314 |
caacaacactaaacaataatcaagcaggtttggttttg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4029052 |
caacaacactaaacaataatcaagcaggtttggttttg |
4029089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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