View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_28 (Length: 317)
Name: NF9223_low_28
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 18936499 - 18936812
Alignment:
| Q |
1 |
tgaaaaccatcatgtgcgttgtctattcttcttctcctggtgatataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18936499 |
tgaaaaccatcatgtgcgttgtctattcttcttctcctggtgatataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccat |
18936598 |
T |
|
| Q |
101 |
tcagctctataagagagacgcattattagcttcctttgatgaagagatgtgggagagaatagtatcaaatacagaactaggtgatatagtgaaggttatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18936599 |
tcagctctataagagagacgcattattagcttcctttgatgaagagatgtgggagagaatagtatcaaatacagaaccaggtgatatagtgaaggttatg |
18936698 |
T |
|
| Q |
201 |
gttgtttatgaaaacaaatttatcgtgaagaagactacagtttatctagtctataatgaaccaaacgataaaaagataaagcactgccttgagtcagata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18936699 |
gttgtttatgaaaacaaatttatcgtgaagaagactacagtttatctagtctataatgaaccaaatgataaaaagataaagcactgccttgagtcagata |
18936798 |
T |
|
| Q |
301 |
ataaggacattgga |
314 |
Q |
| |
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|||||||||||||| |
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| T |
18936799 |
ataaggacattgga |
18936812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 34723544 - 34723246
Alignment:
| Q |
1 |
tgaaaaccatcatgtgcgttgtctattcttcttctcctggtgatataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgt |
100 |
Q |
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||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |
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| T |
34723544 |
tgaaaacaatcatgtgcactgtctattcttcttctccaggtgatataacatcagaaggccttaaagtattgttggtgataaattgtacaaagaacaccat |
34723445 |
T |
|
| Q |
101 |
tcagctctataagagagacgcattattagcttcctttgatgaagagatgtgggagagaatagtatcaaatacagaactaggtgatatagtgaaggttatg |
200 |
Q |
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||||||| ||||||| |||||||||||||| ||||||||||||||| |||| ||| | |||||||||||||||||| ||||||||||||||| |||| | |
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| T |
34723444 |
tcagctccataagagtgacgcattattagcctcctttgatgaagaggagtggcagaaagtagtatcaaatacagaaccaggtgatatagtgaatgttacg |
34723345 |
T |
|
| Q |
201 |
gttgtttatgaaaacaaatttatcgtgaagaagactacagtttatctagtctataatgaaccaaacgataaaaagataaagcactgccttgagtcagat |
299 |
Q |
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| T |
34723344 |
gttgtttttgaaaacaaatttatcgtgaagaagacaacagtttatctagtctatgatgaaccaaatgatataaaggcaaagccctgccttgagtcagat |
34723246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 7884403 - 7884235
Alignment:
| Q |
9 |
atcatgtgcgttgtctattcttcttctcctggtgatataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgttcagctct |
108 |
Q |
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||||||||| ||| |||||||||||||| | ||| |||| ||| ||| |||||||| ||||||||||||||||||| || |||||| |||| ||| |
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| T |
7884403 |
atcatgtgcattgcctattcttcttctctagacaatacaacaacagttggctttaaagttgtgttggtgataaattgcaccaaaaacaccattcatgtct |
7884304 |
T |
|
| Q |
109 |
ataagagagacgcattattagcttcctttgatgaagagatgtgggagagaatagtatcaaatacagaac |
177 |
Q |
| |
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| |||| || |||||||||| | || || || || ||| |||| ||||| || ||||||||| ||||| |
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| T |
7884303 |
acaagataggcgcattattatcatctttcgacgaggaggagtggcagagagtaatatcaaatatagaac |
7884235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 4346452 - 4346522
Alignment:
| Q |
48 |
acatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgttcagctctataagagaga |
118 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
4346452 |
acatcagatggccttaaaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagagaga |
4346522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 4319511 - 4319430
Alignment:
| Q |
45 |
ataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgttcagctctataagagagacgcattat |
126 |
Q |
| |
|
||||||||||| |||||| || | |||| ||||||||| |||||||| |||| |||| |||||||||||||| ||||||| |
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| T |
4319511 |
ataacatcagatggccttgaaaatgtgttagtgataaatcacacaaagaccaccattcaactctataagagagaagcattat |
4319430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 4336988 - 4337069
Alignment:
| Q |
45 |
ataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgttcagctctataagagagacgcattat |
126 |
Q |
| |
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||||||||||| |||||| || | |||||||||||||| |||||||| |||| |||| |||| ||||||||| ||||||| |
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| T |
4336988 |
ataacatcagatggccttcaaaatgtgttggtgataaatcacacaaagaccaccattcaactctttaagagagaggcattat |
4337069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 4362638 - 4362711
Alignment:
| Q |
45 |
ataacatcagaaggccttaaagttttgttggtgataaattgcacaaagaacaccgttcagctctataagagaga |
118 |
Q |
| |
|
||||||||||| ||||||| | | |||||||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
4362638 |
ataacatcagatggccttagaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagagaga |
4362711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 4122828 - 4122780
Alignment:
| Q |
70 |
tgttggtgataaattgcacaaagaacaccgttcagctctataagagaga |
118 |
Q |
| |
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|||||||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
4122828 |
tgttggtgataaatcacacaaagaccaccattcaactctataagagaga |
4122780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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