View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9223_low_29 (Length: 315)
Name: NF9223_low_29
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_29 |
 | |
|
| [»] scaffold1961 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 14652796 - 14653087
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14652796 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
14652895 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14652896 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
14652995 |
T |
|
| Q |
201 |
ctgaatgaggaaacggatagagttcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14652996 |
ctgaatgaggaaacggatagagttcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
14653087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 14661231 - 14661522
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14661231 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgagac |
14661330 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
14661331 |
tccttttctgcaagttttagctgaatcttacaaggctgaatctgagaaatatattgagtgctgtgactgcgaggattatctcaagaaagttgagaggtgc |
14661430 |
T |
|
| Q |
201 |
ctgaatgaggaaacggatagagttcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
292 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14661431 |
ctgactgaggaaacggatagaattcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
14661522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 14627381 - 14627533
Alignment:
| Q |
3 |
gagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14627381 |
gagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactc |
14627480 |
T |
|
| Q |
103 |
cttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatatt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14627481 |
cttttctgcaagttttagctgaatcttacaaggctgaatcccataaatatatt |
14627533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 14758190 - 14757897
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||| |||||||||| ||||||| ||| ||||| |
|
|
| T |
14758190 |
aggaacgtgctggggaagatgttaatatagaactgattaaaaatattacaaagatgctaatggatttaggttcttctgtttaagagcaagaattcgagac |
14758091 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
| | ||||| ||||||| |||||| | |||| ||||||||| ||||||| ||| |||| | ||| || || ||||||||||||||||||||||| ||| |
|
|
| T |
14758090 |
ttcgtttctacaagtttcagctgagttctacagggctgaatctcagaaatttatcgagtgctgtgattgcggtgattatctcaagaaagttgagaggtgc |
14757991 |
T |
|
| Q |
201 |
ctgaatgaggaaacggatagagt---tcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
|||||||||||||| |||||| | || ||||| ||||||| ||||||||||| |||| || || |||||||||||||||||||||||||| |
|
|
| T |
14757990 |
ctgaatgaggaaacagatagaatgtgccactacttagaccctagcactgaaaagaagattactagtgtgatcgagaaggagatgattgaaaatc |
14757897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14750268 - 14750048
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||||| |||||||||| | |||||||||| |||||||||||||| | |||||||||| ||| ||||||||| |
|
|
| T |
14750268 |
aggagcatgctgcggaagatgttaatagagaaccgattagaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagac |
14750169 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
||||||| | ||||||| |||||| | || | ||||||||||||||||| | || | | || ||| || || |||||| |||||||||||| | | |
|
|
| T |
14750168 |
tccttttttacaagtttcagctgagttctatagggctgaatcccagaaatttgttgatttttctgattgcggtgattatttcaagaaagttgcaaagcgg |
14750069 |
T |
|
| Q |
201 |
ctgaatgaggaaacggataga |
221 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
14750068 |
ctgaatgaggaaacagataga |
14750048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 14765348 - 14765057
Alignment:
| Q |
3 |
gagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactc |
102 |
Q |
| |
|
||||||||||| |||| |||||| |||| ||||||||||| | | ||||||||||| || ||| ||||||||| ||||||||| ||| |||||||| || |
|
|
| T |
14765348 |
gagcgtgccggcgaagttgttaatagaggactgattagaagtataacaaagatgctaattgatacaggtccttccgtttatgaggaagaatttgagaatc |
14765249 |
T |
|
| Q |
103 |
cttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgcct |
202 |
Q |
| |
|
||||||||| || || | |||| | || ||||||||| |||| || |||| |||| | || | |||||||||||||||||| | ||||| || |
|
|
| T |
14765248 |
cttttctgctagcttcaactgagttctatcgggctgaatcacagatatttattgagtgctgtggttctggggattatctcaagaaggctgagatgcatct |
14765149 |
T |
|
| Q |
203 |
gaatgaggaaacggatagagt---tcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||| ||||||| |||||||| || | | | |||||||||||| | ||||||| |
|
|
| T |
14765148 |
gaatgaggaacttgatagagtgagccactacttggaccctagcactgaaacgaaaattactactctggtggagaaggagatgctcgaaaatc |
14765057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 17690956 - 17690665
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17690956 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagac |
17690857 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17690856 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagaggtgc |
17690757 |
T |
|
| Q |
201 |
ctgaatgaggaaacggatagagttcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17690756 |
ttgaatgaggaaacggatagagttcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
17690665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 17684030 - 17683739
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17684030 |
aggagtgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgagac |
17683931 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
17683930 |
tccttttctgcaagttttagctgaatcttacaaggctgaatccgagaaatatatcgagtgttgtgactgcggggattatctcaagaaagttgagaggtgc |
17683831 |
T |
|
| Q |
201 |
ctgaatgaggaaacggatagagttcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
292 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17683830 |
ctgaatgaggaaacggatagaattcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatcc |
17683739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 17702112 - 17701960
Alignment:
| Q |
3 |
gagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17702112 |
gagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactc |
17702013 |
T |
|
| Q |
103 |
cttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatatt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17702012 |
cttttctgcaagttttagctgaatcttacaaggctgaatcccataaatatatt |
17701960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 17570345 - 17570638
Alignment:
| Q |
1 |
aggagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagac |
100 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
17570345 |
aggaacgtgctggggaagatgttaatatagaactgattaaaaatattacaaagatgctaatggatttaggttcttctgtttatgagcaagaattcgagac |
17570444 |
T |
|
| Q |
101 |
tccttttctgcaagttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgc |
200 |
Q |
| |
|
| | ||||| ||||||| |||||| | |||| ||||||||| ||||||| ||| |||| | ||| || || ||||||||||||||||||||||| ||| |
|
|
| T |
17570445 |
ttcgtttctacaagtttcagctgagttctacagggctgaatctcagaaatttatcgagtgctgtgattgcggtgattatctcaagaaagttgagaggtgc |
17570544 |
T |
|
| Q |
201 |
ctgaatgaggaaacggatagagt---tcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
|||||||||||||| |||||| | || ||||||||||||| ||||||||||| |||| || || |||||||||||||||||||||||||| |
|
|
| T |
17570545 |
ctgaatgaggaaacagatagaatgtgccactacttggaccctagcactgaaaagaagattactagtgtgatcgagaaggagatgattgaaaatc |
17570638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 17563251 - 17563359
Alignment:
| Q |
3 |
gagcgtgccggggaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactc |
102 |
Q |
| |
|
||||||||||| |||| |||||| |||| ||||||||||| | | ||||||||||| || ||| ||||||||| ||||||| | ||| |||||||| || |
|
|
| T |
17563251 |
gagcgtgccggcgaagttgttaatagaggactgattagaagtataacaaagatgctaattgatacaggtccttccgtttatggggaagaatttgagaatc |
17563350 |
T |
|
| Q |
103 |
cttttctgc |
111 |
Q |
| |
|
||||||||| |
|
|
| T |
17563351 |
cttttctgc |
17563359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 17622081 - 17622017
Alignment:
| Q |
159 |
tgttttgactgtggggattatctcaagaaagttgagagatgcctgaatgaggaaacggatagagt |
223 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||| | |||||||||||| ||||||||| |
|
|
| T |
17622081 |
tgttgtgattgtggggattatctcaagaaagctgagaggcggctgaatgaggaattggatagagt |
17622017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 15195782 - 15195503
Alignment:
| Q |
15 |
gaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaag |
114 |
Q |
| |
|
|||| |||||||| | || ||||||||||| | ||||| ||||| ||||||||||| ||||| ||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
15195782 |
gaagttgttaacataaaagtgattagaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatccttttctgcagc |
15195683 |
T |
|
| Q |
115 |
ttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgcctgaatgaggaaac |
214 |
Q |
| |
|
|| ||| || | ||| ||||||||| ||||||| |||| |||| | ||| |||||||||||||||||||| | ||||| |||||||||||| || |
|
|
| T |
15195682 |
ttccagccgagttctaccgggctgaatcacagaaatttattgagtgctgtgattgtggggattatctcaagaaggctgagatgcgcctgaatgaggtaat |
15195583 |
T |
|
| Q |
215 |
ggatagagt---tcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
|||||||| || | || |||||||| ||| ||||||| |||| || || | | |||||||||||||| ||||||| |
|
|
| T |
15195582 |
tgatagagtgagccacttctgggaccctagcactcaaaagaagattactattgtggtggagaaggagatgatcgaaaatc |
15195503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 15216200 - 15215921
Alignment:
| Q |
15 |
gaagatgttaacagagaactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaag |
114 |
Q |
| |
|
|||| |||||||| | || ||||||||||| | ||||| ||||| ||||||||||| ||||| ||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
15216200 |
gaagttgttaacataaaagtgattagaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatccttttctgcagc |
15216101 |
T |
|
| Q |
115 |
ttttagctgaatcttacaaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgcctgaatgaggaaac |
214 |
Q |
| |
|
|| ||| || | ||| ||||||||| ||||||| |||| |||| | ||| |||||||||||||||||||| | ||||| |||||||||||| || |
|
|
| T |
15216100 |
ttccagccgagttctaccgggctgaatcacagaaatttattgagtgctgtgattgtggggattatctcaagaaggctgagatgcgcctgaatgaggtaat |
15216001 |
T |
|
| Q |
215 |
ggatagagt---tcattacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
|||||||| || | || |||||||| ||| ||||||| |||| || || | | |||||||||||||| ||||||| |
|
|
| T |
15216000 |
tgatagagtgagccacttctgggaccctagcactcaaaagaagattactattgtggtggagaaggagatgatcgaaaatc |
15215921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 15196417 - 15196154
Alignment:
| Q |
31 |
aactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatctta |
130 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||||||||||||||| |||||| ||||| |||||||| |||||| |||||||||| |||||| | || |
|
|
| T |
15196417 |
aactgattagatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctgagttcta |
15196318 |
T |
|
| Q |
131 |
caaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgcctgaatgaggaaacggatagagt---tcat |
227 |
Q |
| |
|
| ||||||||| ||||||| ||| || | | ||| |||||||||||||| ||||| | ||||| |||||||||||| || |||| ||| || |
|
|
| T |
15196317 |
ccgggctgaatcacagaaattgattgagcgctatgattgtggggattatctaaagaaggctgagatgcgcctgaatgaggtaattgataaagtgagccac |
15196218 |
T |
|
| Q |
228 |
tacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
| ||||||||||| ||| ||||||| |||| || || | | |||||||||||||| ||||||| |
|
|
| T |
15196217 |
ttcttggaccctagcactcaaaagaagattactattgtggtggagaaggagatgatcgaaaatc |
15196154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 15216835 - 15216572
Alignment:
| Q |
31 |
aactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatctta |
130 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||||||||||||||| |||||| ||||| |||||||| |||||| |||||||||| |||||| | || |
|
|
| T |
15216835 |
aactgattagatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctgagttcta |
15216736 |
T |
|
| Q |
131 |
caaggctgaatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgcctgaatgaggaaacggatagagt---tcat |
227 |
Q |
| |
|
| ||||||||| ||||||| ||| || | | ||| |||||||||||||| ||||| | ||||| |||||||||||| || |||| ||| || |
|
|
| T |
15216735 |
ccgggctgaatcacagaaattgattgagcgctatgattgtggggattatctaaagaaggctgagatgcgcctgaatgaggtaattgataaagtgagccac |
15216636 |
T |
|
| Q |
228 |
tacttggaccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
| ||||||||||| ||| ||||||| |||| || || | | |||||||||||||| ||||||| |
|
|
| T |
15216635 |
ttcttggaccctagcactcaaaagaagattactattgtggtggagaaggagatgatcgaaaatc |
15216572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 291
Target Start/End: Complemental strand, 24395732 - 24395477
Alignment:
| Q |
39 |
agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg |
138 |
Q |
| |
|
|||||| | ||||| ||||| |||||||||||||| ||||||||| |||| |||||| ||| |||||| ||||||| |||||| | ||| ||| | |
|
|
| T |
24395732 |
agaaatataacaaaaatgctaatggatttaggtccagctgtttatggtcaagattttgaggctcattttcttcaagtttcagctgagttttatcaggtag |
24395633 |
T |
|
| Q |
139 |
aatcccagaaatatattaagtgttttgactgtggggattatctcaagaaagttgagagatgcctgaatgaggaaacggatagagtt---cattacttgga |
235 |
Q |
| |
|
||||||| | || ||| |||||| ||| ||||| |||||||| ||||||| ||| || | ||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
24395632 |
aatcccaaagattcattgagtgttgtgattgtggtgattatcttaagaaagctgaaaggcgtctgaatgaggaaatggatagagttggccattacatgga |
24395533 |
T |
|
| Q |
236 |
ccctaagactgaaaagaaaattattaatgcgatcgagaaggagatgattgaaaatc |
291 |
Q |
| |
|
|| ||||||||||||| |||| ||| | | | |||| | ||||||||||||||| |
|
|
| T |
24395532 |
tcccgagactgaaaagaagattaataaagtggtggagacgcagatgattgaaaatc |
24395477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 115 - 22
Alignment:
| Q |
31 |
aactgattagaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctga |
124 |
Q |
| |
|
||||||||||||| | || || ||||| ||||||||||||||||| |||||| ||||| |||||||| |||||| |||||||||| |||||| |
|
|
| T |
115 |
aactgattagaaaaataacgaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctga |
22 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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