View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9223_low_31 (Length: 312)

Name: NF9223_low_31
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9223_low_31
NF9223_low_31
[»] chr5 (11 HSPs)
chr5 (49-290)||(42148048-42148294)
chr5 (31-149)||(11607539-11607657)
chr5 (31-149)||(33858543-33858661)
chr5 (31-140)||(19357267-19357375)
chr5 (31-147)||(1826309-1826425)
chr5 (62-147)||(39570079-39570164)
chr5 (31-147)||(33271664-33271780)
chr5 (81-140)||(9827845-9827904)
chr5 (31-116)||(10292954-10293038)
chr5 (31-136)||(29990023-29990129)
chr5 (31-136)||(38010618-38010724)
[»] chr7 (8 HSPs)
chr7 (25-149)||(35341584-35341708)
chr7 (31-133)||(48072451-48072553)
chr7 (31-133)||(32694575-32694677)
chr7 (31-140)||(48250211-48250322)
chr7 (152-235)||(30616772-30616857)
chr7 (36-74)||(31306878-31306916)
chr7 (42-99)||(40856943-40857000)
chr7 (92-147)||(40856481-40856536)
[»] chr3 (12 HSPs)
chr3 (25-149)||(44380302-44380426)
chr3 (36-140)||(35094605-35094709)
chr3 (31-140)||(33509737-33509846)
chr3 (31-140)||(37742782-37742891)
chr3 (51-147)||(47426400-47426496)
chr3 (36-147)||(17466323-17466434)
chr3 (31-136)||(31187074-31187180)
chr3 (31-136)||(47186236-47186342)
chr3 (80-136)||(42664734-42664791)
chr3 (84-136)||(50934561-50934614)
chr3 (85-128)||(34029349-34029393)
chr3 (63-147)||(39498707-39498790)
[»] chr2 (9 HSPs)
chr2 (36-140)||(23863813-23863917)
chr2 (31-140)||(34392086-34392195)
chr2 (25-138)||(4779644-4779757)
chr2 (31-140)||(25275627-25275735)
chr2 (36-137)||(4775694-4775796)
chr2 (31-140)||(41095791-41095900)
chr2 (93-141)||(21604015-21604063)
chr2 (37-137)||(7381752-7381851)
chr2 (31-75)||(21606161-21606205)
[»] chr4 (14 HSPs)
chr4 (38-140)||(35869583-35869685)
chr4 (40-147)||(21260844-21260951)
chr4 (46-147)||(33249394-33249495)
chr4 (36-147)||(22343387-22343498)
chr4 (41-140)||(51811971-51812070)
chr4 (31-140)||(12473761-12473870)
chr4 (31-140)||(12528170-12528279)
chr4 (37-113)||(55590555-55590631)
chr4 (25-105)||(1796642-1796722)
chr4 (78-128)||(33174584-33174632)
chr4 (80-136)||(52012839-52012896)
chr4 (103-140)||(52910126-52910163)
chr4 (37-83)||(35781023-35781069)
chr4 (85-136)||(9799421-9799473)
[»] chr6 (4 HSPs)
chr6 (31-140)||(5403881-5403990)
chr6 (31-133)||(1211849-1211951)
chr6 (152-229)||(8982621-8982702)
chr6 (41-142)||(32644852-32644952)
[»] scaffold0519 (1 HSPs)
scaffold0519 (36-140)||(11251-11355)
[»] chr8 (7 HSPs)
chr8 (36-140)||(11254038-11254142)
chr8 (31-137)||(24337835-24337941)
chr8 (31-147)||(41179568-41179684)
chr8 (64-147)||(4708345-4708428)
chr8 (36-140)||(18168442-18168547)
chr8 (36-140)||(18631999-18632104)
chr8 (81-136)||(1514864-1514920)
[»] chr1 (8 HSPs)
chr1 (49-149)||(8462176-8462276)
chr1 (36-140)||(32676193-32676297)
chr1 (36-128)||(29119334-29119426)
chr1 (31-140)||(2569094-2569202)
chr1 (25-125)||(46435464-46435564)
chr1 (31-136)||(8809644-8809750)
chr1 (105-139)||(3688917-3688951)
chr1 (104-140)||(25161366-25161402)
[»] scaffold0032 (1 HSPs)
scaffold0032 (36-136)||(34255-34353)
[»] scaffold0229 (1 HSPs)
scaffold0229 (31-133)||(13010-13113)
[»] scaffold0263 (1 HSPs)
scaffold0263 (89-140)||(23162-23213)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 49 - 290
Target Start/End: Complemental strand, 42148294 - 42148048
Alignment:
Q  49 tatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcacta 148  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||       
T  42148294 tatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggctca--- 42148198  T
Q  149 tttatttatgtctattttatgaaacaacttgtatatataagttacaattttttggct-ccccacatttttagttaagatccgccaccgtcaa-------- 239  Q
     |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||            
T  42148197 -ttatttctgtctattttatgaaacagcttgtatatataagttacaattttttggctcccccacatttttagttaagatccgccactgtcaaacactaat 42148099  T
Q  240 ttacttgatattatttaccgtaaaataagttgttcatgttcttccggacaa 290  Q
     || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  42148098 atagttgatattatttactgtaaaataagttgttcatgttcttccggacaa 42148048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 11607539 - 11607657
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11607539 acttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 11607638  T
Q  131 ttggtaggtgactcactat 149  Q
    |||||||||| | ||||||    
T  11607639 ttggtaggtggcacactat 11607657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 33858543 - 33858661
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  33858543 acttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaaca 33858642  T
Q  131 ttggtaggtgactcactat 149  Q
    |||||||||| | ||||||    
T  33858643 ttggtaggtggcacactat 33858661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 19357267 - 19357375
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||||||||||||||||||||||||  |||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  19357267 acttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaagtaata 19357365  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  19357366 ttggtaggtg 19357375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 1826425 - 1826309
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||| ||||||||||||||||||||| |||||| ||||||| | |||| |||  |||||||||| ||||||||||||| ||| || |||||||||    
T  1826425 acttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaaagtaata 1826326  T
Q  131 ttggtaggtgactcact 147  Q
    |||||||||||| ||||    
T  1826325 ttggtaggtgacacact 1826309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 39570079 - 39570164
Alignment:
Q  62 ccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 147  Q
    ||||||||||| ||  | |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  39570079 ccaattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacact 39570164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 33271780 - 33271664
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    ||||||||||||||||| ||||||  |||| ||||||||||||||| ||||||  || ||||||||||| ||||||||||||| ||||||| |||||| |    
T  33271780 acttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatcaagtaaca 33271681  T
Q  131 ttggtaggtgactcact 147  Q
    ||| ||| |||| ||||    
T  33271680 ttgatagatgacacact 33271664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 9827904 - 9827845
Alignment:
Q  81 tggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 140  Q
    |||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||    
T  9827904 tggtacacccttaaaaaagatatatcaaataaaatatttataaagtaatattggtaggtg 9827845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 10293038 - 10292954
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaaca 116  Q
    |||| |||||||||||| |||||| ||||| |||||||   ||||| |||||| |||||||||||||||  |||||||||||||||    
T  10293038 acttgtgtaccataatgttatataacattggccaattaaggtgtgccacgtggcacaccctttaaaaaa-aatatcaaataaaaca 10292954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 29990129 - 29990023
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 129  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||  | |||| |||| ||||||||||  ||||||||||||||||||||||||||||     
T  29990129 acttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaac 29990030  T
Q  130 attggta 136  Q
    |||||||    
T  29990029 attggta 29990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 38010618 - 38010724
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 129  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||| | |||| |||| ||||||||||  |||||||||||||  |||||||||||||     
T  38010618 acttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaac 38010717  T
Q  130 attggta 136  Q
    |||||||    
T  38010718 attggta 38010724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 35341708 - 35341584
Alignment:
Q  25 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 124  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  35341708 gataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaa 35341609  T
Q  125 gtaatattggtaggtgactcactat 149  Q
    |||| ||||||||||| | ||||||    
T  35341608 gtaacattggtaggtggcacactat 35341584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 48072553 - 48072451
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||| |||||| ||||||||||||||| || ||||||||||| ||||||||| ||| |    
T  48072553 acttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataaaataaca 48072454  T
Q  131 ttg 133  Q
    |||    
T  48072453 ttg 48072451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 32694575 - 32694677
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| ||||| |||||| |||||| ||||| | ||||||||||||  |||||| ||||||||||||||| |||||||||||||  ||||||||||||| |    
T  32694575 acttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataaagtaaca 32694674  T
Q  131 ttg 133  Q
    |||    
T  32694675 ttg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 48250322 - 48250211
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtg--gtacaccctttaaaaaagtatatcaaataaaacatttataaagtaa 128  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||  || ||  | | |||||||||||||  |||||||||||| ||| ||||||||||    
T  48250322 acttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctataaagtaa 48250223  T
Q  129 tattggtaggtg 140  Q
     |||||||||||    
T  48250222 cattggtaggtg 48250211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 30616857 - 30616772
Alignment:
Q  152 atttatgtctattttatgaaacaacttgtatatataagttacaattttttggctcccc--acatttttagttaagatccgccaccg 235  Q
    |||| |||||||||||||||||||||||||||||  ||||| | || |||||| ||||  ||||||||| | ||||||||||||||    
T  30616857 atttgtgtctattttatgaaacaacttgtatataggagttaaatttatttggcacccctaacatttttaatcaagatccgccaccg 30616772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 31306878 - 31306916
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgt 74  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31306878 tgtaccataatgatatatatcattgtccaattagaatgt 31306916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 40857000 - 40856943
Alignment:
Q  42 ataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaa 99  Q
    |||||| |||||||||||||||||||||||||||  | |||| |||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacaccctttaaaaaa 40856943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 40856536 - 40856481
Alignment:
Q  92 ttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 147  Q
    |||||||| || |||||||||||||| |||||| ||| ||||||||||||| ||||    
T  40856536 ttaaaaaaatacatcaaataaaacatctataaaataacattggtaggtgacacact 40856481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 44380426 - 44380302
Alignment:
Q  25 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 124  Q
    ||||| |||| |||||||||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  44380426 gataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaa 44380327  T
Q  125 gtaatattggtaggtgactcactat 149  Q
    ||||||||| |||||||| ||||||    
T  44380326 gtaatattgataggtgacacactat 44380302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 35094709 - 35094605
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||||  ||| ||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  35094709 tgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagtaacattggt 35094610  T
Q  136 aggtg 140  Q
    |||||    
T  35094609 aggtg 35094605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 33509846 - 33509737
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| ||||| |||||| |||||||||||||| ||||||||||||| | |||| ||| ||||||||||| || |||||||||| ||| ||||||||||||    
T  33509846 acttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaagtaata 33509747  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  33509746 ttggtaggtg 33509737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 37742891 - 37742782
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||| ||||||| |||||| ||||| ||||||| ||||||| |||||| |||| |||||||||| ||||||||||||| ||||  ||| |||| |    
T  37742891 acttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggtaatgtaaca 37742792  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  37742791 ttggtaggtg 37742782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 47426496 - 47426400
Alignment:
Q  51 tatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 147  Q
    |||| ||||| ||||||||||||| | | |||| ||||||||||||||| ||||||||||||| ||| |||||||||| |||| |||||||| ||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacact 47426400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 17466434 - 17466323
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    |||||| ||||| |||||| |||||  || ||||| ||||  |||||| | ||||||||||||| |||||||| |||| |||||||||||||| |||| |    
T  17466434 tgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataaagtaacattgat 17466335  T
Q  136 aggtgactcact 147  Q
    ||||||| ||||    
T  17466334 aggtgacacact 17466323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 31187074 - 31187180
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 129  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||  | |||| |||| ||||||||||  ||||||||||||||||||||||||||||     
T  31187074 acttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaatatatatcaaataaaacatttataaagtaac 31187173  T
Q  130 attggta 136  Q
    |||||||    
T  31187174 attggta 31187180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 47186342 - 47186236
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 129  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||| | |||| |||| ||||||||||  |||||||||||||  |||||||||||||     
T  47186342 acttgtgtaccattatgttatataacattagccaattaaggtgtgccatgtggcacacactttaaaaaacatatatcaaataaagtatttataaagtaac 47186243  T
Q  130 attggta 136  Q
    |||||||    
T  47186242 attggta 47186236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 42664791 - 42664734
Alignment:
Q  80 gtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 136  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  42664791 gtggcacacactttaaaaaacatatatcaaataaaacatttataaaataacattggta 42664734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 50934614 - 50934561
Alignment:
Q  84 tacaccctttaaa-aaagtatatcaaataaaacatttataaagtaatattggta 136  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||||| |||||||    
T  50934614 tacaccctttaaataaaatatatcaaataatgcatttataaagtaacattggta 50934561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 34029349 - 34029393
Alignment:
Q  85 acaccctttaaaaaag-tatatcaaataaaacatttataaagtaa 128  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||    
T  34029349 acacactttaaaaaacatatatcaaataaaacatttataaagtaa 34029393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 39498707 - 39498790
Alignment:
Q  63 caattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 147  Q
    |||||||||||||  |||||| ||| ||||| ||||| ||||| |||||||| ||||||||| ||| || | |||||||| ||||    
T  39498707 caattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacacact 39498790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 23863813 - 23863917
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  23863813 tgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggt 23863912  T
Q  136 aggtg 140  Q
    |||||    
T  23863913 aggtg 23863917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 34392086 - 34392195
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||| | |||| ||||||||||||||| ||||||||||||| |||||||||||||| |    
T  34392086 acttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaagtaaga 34392185  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  34392186 ttggtaggtg 34392195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 4779757 - 4779644
Alignment:
Q  25 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 124  Q
    ||||| |||| |||| ||||||| |||||| ||||||||||||||||||||  |||||  ||| ||||||||||| |||||||||||||  |||||||||    
T  4779757 gataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttataaa 4779658  T
Q  125 gtaatattggtagg 138  Q
    |||| |||| ||||    
T  4779657 gtaacattgttagg 4779644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 25275627 - 25275735
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||   |||||| ||| |||||||||||||||||||||||||  ||||| ||||||| |    
T  25275627 acttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtattta-aaagtaaca 25275725  T
Q  131 ttggtaggtg 140  Q
    ||| ||||||    
T  25275726 ttgataggtg 25275735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 4775796 - 4775694
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaac-atttataaagtaatattgg 134  Q
    |||||||||||| |||||| ||||||||||||| | ||||| | |||| ||| ||||||||||| ||||| ||||||||| ||| ||||||||| |||||    
T  4775796 tgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaataaagtaagattgg 4775697  T
Q  135 tag 137  Q
    |||    
T  4775696 tag 4775694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 41095791 - 41095900
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    ||||| ||||||||||| |||||| ||||| ||| ||||  ||||| | |||| | ||| ||||||||| | ||||||||||| |||||||||||||| |    
T  41095791 acttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataaagtaaca 41095890  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  41095891 ttggtaggtg 41095900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 21604063 - 21604015
Alignment:
Q  93 taaaaaagtatatcaaataaaacatttataaagtaatattggtaggtga 141  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21604063 taaaaaagtatatcaaataaaacatttataaagtaacattggtaggtga 21604015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 7381851 - 7381752
Alignment:
Q  37 gtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggta 136  Q
    |||| |||||| ||||||  |||| ||||||| ||||||  || ||  ||| ||||||||||| |||||||||||||  ||||||||||||| |||||||    
T  7381851 gtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataaagtaacattggta 7381753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 21606205 - 21606161
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtg 75  Q
    |||| |||| ||||||| |||||| ||||||||||||||||||||    
T  21606205 acttctgtatcataatggtatataccattgtccaattagaatgtg 21606161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 35869583 - 35869685
Alignment:
Q  38 taccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtag 137  Q
    |||||||||| |||||| |||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  35869583 taccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaacattggtag 35869682  T
Q  138 gtg 140  Q
    |||    
T  35869683 gtg 35869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 21260951 - 21260844
Alignment:
Q  40 ccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggt 139  Q
    |||||||| |||||| ||||  ||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  21260951 ccataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggt 21260852  T
Q  140 gactcact 147  Q
    ||| ||||    
T  21260851 gacacact 21260844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 33249394 - 33249495
Alignment:
Q  46 tgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactca 145  Q
    |||||||||||||||  |||||||| ||||| | |||| ||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||| ||    
T  33249394 tgatatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacaca 33249493  T
Q  146 ct 147  Q
    ||    
T  33249494 ct 33249495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 22343498 - 22343387
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    |||||||||||| ||||||||||||| |||||||||||||  | |||| ||| ||||||||| | ||||||||||||| |||||||||||||| |||| |    
T  22343498 tgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattgat 22343399  T
Q  136 aggtgactcact 147  Q
    || |||| ||||    
T  22343398 agatgacacact 22343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 51812070 - 51811971
Alignment:
Q  41 cataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 140  Q
    ||||||| |||||| |||| |||||||||||||||  || ||| ||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||    
T  51812070 cataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataaagtaacattggtaggtg 51811971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 12473870 - 12473761
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| |||||  |||||||||||||  | |||  ||||||||||||||| ||||||||||||| ||| |||||||||| |    
T  12473870 acttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaaca 12473771  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  12473770 ttggtaggtg 12473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 12528279 - 12528170
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| |||||  |||||||||||||  | |||  ||||||||||||||| ||||||||||||| ||| |||||||||| |    
T  12528279 acttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaaca 12528180  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  12528179 ttggtaggtg 12528170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 55590631 - 55590555
Alignment:
Q  37 gtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaa 113  Q
    ||||||||||| |||||  ||||| ||||||||||||||  |||||| ||| |||||||||||||||||||||||||    
T  55590631 gtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaa 55590555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 1796722 - 1796642
Alignment:
Q  25 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatat 105  Q
    ||||| |||| |||||||||||| |||||| ||||||||||||| | ||||| |||||  ||| ||||||||||| |||||    
T  1796722 gataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatcctttaaaaaaatatat 1796642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 33174632 - 33174584
Alignment:
Q  78 acgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaa 128  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  33174632 acgtggcacaccctttaaaaa--tatatcaaataaaacatttataaagtaa 33174584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 52012896 - 52012839
Alignment:
Q  80 gtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 136  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||||||| |||||||    
T  52012896 gtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaacattggta 52012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 52910126 - 52910163
Alignment:
Q  103 tatcaaataaaacatttataaagtaatattggtaggtg 140  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  52910126 tatcaaataaagcatttataaagtaatattggtaggtg 52910163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 35781069 - 35781023
Alignment:
Q  37 gtaccataatgatatatatcattgtccaattagaatgtgcaacgtgg 83  Q
    ||||||||||| |||||| ||||| ||||||||||||||| ||||||    
T  35781069 gtaccataatggtatataccattgcccaattagaatgtgccacgtgg 35781023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 9799421 - 9799473
Alignment:
Q  85 acaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 136  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||| |||||||    
T  9799421 acacactttaaaaaacatatattaaataaaacatttataaagtaacattggta 9799473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 5403881 - 5403990
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||  | ||| ||| |||||||||||| ||||||||||||||||| |||||||||| |    
T  5403881 acttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataaagtaaca 5403980  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  5403981 ttggtaggtg 5403990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 1211849 - 1211951
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||||| |||  ||||||||| |    
T  1211849 acttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaaca 1211948  T
Q  131 ttg 133  Q
    |||    
T  1211949 ttg 1211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 8982702 - 8982621
Alignment:
Q  152 atttatgtctattttatgaaacaacttgtata--tataagttacaattttttggctccc--cacatttttagttaagatccg 229  Q
    |||| |||||||||||||||||||||||||||  |||||||||| ||| ||||||||||  |||||||||||| ||||||||    
T  8982702 atttttgtctattttatgaaacaacttgtatatatataagttaccattatttggctcccctcacatttttagtcaagatccg 8982621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 32644852 - 32644952
Alignment:
Q  41 cataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 140  Q
    ||||||| |||||| |||||| |||||||| |||   | |||| ||||||||||||||| |||| ||||||||  |||| |||||||| ||| |||||||    
T  32644852 cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtattt-taaagtaacatttgtaggtg 32644950  T
Q  141 ac 142  Q
    ||    
T  32644951 ac 32644952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 11355 - 11251
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    |||||||||||| |||||| |||||  || ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11355 tgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaagtaacattggt 11256  T
Q  136 aggtg 140  Q
    |||||    
T  11255 aggtg 11251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 11254038 - 11254142
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    |||||||||||| |||||| |||||  || ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11254038 tgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaagtaacattggt 11254137  T
Q  136 aggtg 140  Q
    |||||    
T  11254138 aggtg 11254142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 24337835 - 24337941
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||| ||| |||||||||| |    
T  24337835 acttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataaagtaaca 24337934  T
Q  131 ttggtag 137  Q
    |||||||    
T  24337935 ttggtag 24337941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 41179568 - 41179684
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||| | |||| ||| || |||||||| ||||| |||||||||||||||||||||| |    
T  41179568 acttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaaca 41179667  T
Q  131 ttggtaggtgactcact 147  Q
    | |||||||||| ||||    
T  41179668 tcggtaggtgacacact 41179684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 4708345 - 4708428
Alignment:
Q  64 aattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcact 147  Q
    ||||||||||||| |||||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  4708345 aattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacact 4708428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 18168547 - 18168442
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattgg 134  Q
    |||||||||||| ||||||| |||  | ||||||| ||||  |||||| ||| |||||||||||  |||||||||||||  ||||||||||||| |||||    
T  18168547 tgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattgg 18168448  T
Q  135 taggtg 140  Q
    ||||||    
T  18168447 taggtg 18168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 18632104 - 18631999
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattgg 134  Q
    |||||||||||| ||||||| |||  | ||||||| ||||  |||||| ||| |||||||||||  |||||||||||||  ||||||||||||| |||||    
T  18632104 tgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttataaagtaagattgg 18632005  T
Q  135 taggtg 140  Q
    ||||||    
T  18632004 taggtg 18631999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 1514920 - 1514864
Alignment:
Q  81 tggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaatattggta 136  Q
    ||||||||  |||||||||  |||||||||||||||||||||||||||| |||||||    
T  1514920 tggtacacattttaaaaaatatatatcaaataaaacatttataaagtaacattggta 1514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 8462276 - 8462176
Alignment:
Q  49 tatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtgactcacta 148  Q
    |||||| ||||||||||||| ||||||  |||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||||| | |||||    
T  8462276 tatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacacta 8462177  T
Q  149 t 149  Q
    |    
T  8462176 t 8462176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 32676297 - 32676193
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    ||||| |||||| |||||| ||||||||||||||| ||||| | |||| |||  |||||||||| ||||||||||||| |||||||||||||| ||||||    
T  32676297 tgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagtaacattggt 32676198  T
Q  136 aggtg 140  Q
    |||||    
T  32676197 aggtg 32676193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 29119334 - 29119426
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaa 128  Q
    |||||||||| | ||||||  |||| ||||||||||||||| | |||| ||||||||||||||| ||||||||||||| ||| ||||||||||    
T  29119334 tgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaa 29119426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 2569202 - 2569094
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaata 130  Q
    |||| |||| ||||||||||||||  |||| | ||||||||||||| || ||| ||||||||||||||| ||||||||||||| ||||  ||| |||| |    
T  2569202 acttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaatgtaaca 2569104  T
Q  131 ttggtaggtg 140  Q
    ||||||||||    
T  2569103 ttggtaggtg 2569094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 46435464 - 46435564
Alignment:
Q  25 gataagacttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaa 124  Q
    |||| ||||| |||||||||||| |||||| ||||| ||||||||||||||  | |||  ||||||||||||||  ||||||||||||| ||| ||||||    
T  46435464 gataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctataaa 46435563  T
Q  125 g 125  Q
    |    
T  46435564 g 46435564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 8809644 - 8809750
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaag-tatatcaaataaaacatttataaagtaat 129  Q
    |||| |||||||| ||| |||||| ||||  |||||||   ||||  | |||| |||| ||||||||||  ||||||||||||||||||||||||||||     
T  8809644 acttgtgtaccattatgttatataacattagccaattaaggtgtgacatgtggcacacactttaaaaaacatatatcaaataaaacatttataaagtaac 8809743  T
Q  130 attggta 136  Q
    |||||||    
T  8809744 attggta 8809750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 3688917 - 3688951
Alignment:
Q  105 tcaaataaaacatttataaagtaatattggtaggt 139  Q
    |||||||||||||||||||||||| ||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtaggt 3688951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 25161402 - 25161366
Alignment:
Q  104 atcaaataaaacatttataaagtaatattggtaggtg 140  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtg 25161366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 34353 - 34255
Alignment:
Q  36 tgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggt 135  Q
    |||||||||| | |||||| |||| |||||||||||||||  |||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  34353 tgtaccataagg-tatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataaagtaatattggt 34256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 13010 - 13113
Alignment:
Q  31 acttatgtaccataatgatatatatcattgtccaattagaatgtgcaacgtggtac-accctttaaaaaagtatatcaaataaaacatttataaagtaat 129  Q
    |||| |||||||||||| |||||| ||||| || |||||||||||| |||||| || ||||||||||||| ||||||||||||| |||  |||||||||     
T  13010 acttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgataaagtaac 13109  T
Q  130 attg 133  Q
    ||||    
T  13110 attg 13113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 23162 - 23213
Alignment:
Q  89 cctttaaaaaagtatatcaaataaaacatttataaagtaatattggtaggtg 140  Q
    ||||| ||||| |||||||||||||| ||||||||||||| |||||||||||    
T  23162 ccttttaaaaaatatatcaaataaaatatttataaagtaaaattggtaggtg 23213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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