View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_38 (Length: 279)
Name: NF9223_low_38
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_38 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 43095824 - 43096092
Alignment:
| Q |
11 |
gattatacttacaatacatataatttattcctataagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctcta |
110 |
Q |
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| T |
43095824 |
gattacacttacaatacatataatttattcctttaagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctcta |
43095923 |
T |
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| Q |
111 |
acagcaaacatggaggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggct |
210 |
Q |
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| T |
43095924 |
acagcaaacatggaggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggct |
43096023 |
T |
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| Q |
211 |
tctaggccatgggaaggacaaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagc |
279 |
Q |
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| T |
43096024 |
tcaaggccatgggaaggacaaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagc |
43096092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 44187960 - 44187711
Alignment:
| Q |
29 |
tataatttattcctataagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatggaggaa |
128 |
Q |
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| T |
44187960 |
tataatttattcatttaaggtttatcataagcaaacatgaaatagttt-atatggataataacctatagcttaatttctctaacagcaaacatggaggaa |
44187862 |
T |
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| Q |
129 |
ctcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggcttctaggccatgggaagga |
228 |
Q |
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| T |
44187861 |
ctcttcaaaacctacagatgccacaattatggatccaaacaatccccattggagatggaattggcttgatagatggatggcttcaaggccatgggaagga |
44187762 |
T |
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| Q |
229 |
caaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagc |
279 |
Q |
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| T |
44187761 |
caaaacactaaggatcaaaagaatcatagatcagcaaaaggtgctgcaagc |
44187711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 279
Target Start/End: Complemental strand, 32727093 - 32726855
Alignment:
| Q |
24 |
atacatataatttattcctataagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatgg |
123 |
Q |
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|||| |||||||||||| | |||| ||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
32727093 |
atacttataatttattcatttaaggtttatcataagcaaacatgaaatagttt-atatggataataacctatagcttaatttctctaacagcaaacatgg |
32726995 |
T |
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| Q |
124 |
aggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggcttctaggccatggg |
223 |
Q |
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| T |
32726994 |
aggaacccttcaaaacctacagatgctacagttatggatccaaacaatccccattggagatggaattg----------------gcttcaaggccatggg |
32726911 |
T |
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| Q |
224 |
aaggacaaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagc |
279 |
Q |
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| T |
32726910 |
aaggacaaaacactaaggatcaaaagaatcatagatcagcaaaaggtgctgcaagc |
32726855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 10769091 - 10768988
Alignment:
| Q |
106 |
ctctaacagcaaacatggaggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatgga |
205 |
Q |
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||||||||||||||||||| ||| ||||||||| ||| | | ||| ||||||||||||||||||| || |||||||||| |||| | || ||||||| |
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| T |
10769091 |
ctctaacagcaaacatggaagaattcttcaaaatctataaaccaaacatttatggatccaaacaatcctcactggggatggagttggttagagagatgga |
10768992 |
T |
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| Q |
206 |
tggc |
209 |
Q |
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|||| |
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| T |
10768991 |
tggc |
10768988 |
T |
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