View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_40 (Length: 268)
Name: NF9223_low_40
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 52296612 - 52296375
Alignment:
| Q |
15 |
cagagactaccaattccaagcaccataaatctggattgttttgccatagcacgaaacctcctacttcagctttgcctcttgaatgaacgctgttatcatc |
114 |
Q |
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| T |
52296612 |
cagagactaccaattccaagcaccataaatctggattgttttgccatagcacgaaacctcctacttcagctttgcctcttgaatgaacgctgttatcatc |
52296513 |
T |
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| Q |
115 |
ggcaccatgacgcatctctgaaccatgtattctaacttctcccattgcatacatgttttgcaatgaattcaatgcaccttgtccaccggttgctgccaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52296512 |
ggcaccatgacgcatctctgaaccatgtattctaacttctcccattgcatacatgttttgcaatgaattcaatgcaccttgtccaccggttgctgccaca |
52296413 |
T |
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| Q |
215 |
tattgttgcactatgtatttcccaattgaatctctctg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52296412 |
tattgttgcactatgtatttcccaattgaatctctctg |
52296375 |
T |
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