View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_44 (Length: 241)
Name: NF9223_low_44
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 6807731 - 6807952
Alignment:
| Q |
18 |
agttccaactacctctgaagattgacttgagctgcataagagcatgcaaattaaagcataaaaagtgttttcttctataaattgattaacttttatataa |
117 |
Q |
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| T |
6807731 |
agttccaactacctctgaagattgacttgagctgcataagagcatgcaaattaaaggataaaaagtgttttcttctataaattgattaacttttatataa |
6807830 |
T |
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| Q |
118 |
gtttgaaatttatttttctttttaaagaaaacaactt---aaggnnnnnnnnncaattgtcttgatttgaatcatattaaatggtaaattgtcgaggaat |
214 |
Q |
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| T |
6807831 |
gtttgaaatttatctttctttttaaagaaaacaactttaaaaaaaaaaaaaaaaaattgtcttgatttgaatcatattaaatggtaaattgtcgaggaat |
6807930 |
T |
|
| Q |
215 |
gactcaaaattagtctgtgctg |
236 |
Q |
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|||||||||||||| ||||||| |
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| T |
6807931 |
gactcaaaattagtgtgtgctg |
6807952 |
T |
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