View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_47 (Length: 239)
Name: NF9223_low_47
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 9278092 - 9278311
Alignment:
| Q |
10 |
agaacctgtgatcaaacttacctctctaaaaactctcacaattgaagaaatgtgttgattaacatctaaaggaaaacaccctccaaatgattcatctatt |
109 |
Q |
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| T |
9278092 |
agaacttgtgatcaaacttacctctctaaatactctcacaattgaagaaatgtgttgattaacatctaaaggaaaacaccctccaaatgattcatctatt |
9278191 |
T |
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| Q |
110 |
tgcttcaataaaaacaaagattttgtgcatgatttcttcatgcttcttcttaaactccagtatgaagatacacaactttcaattacatattctccaaatt |
209 |
Q |
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| T |
9278192 |
tgcttcaataaaaacaaagattttgtgcatgatttcttcatgcttcttcttaaactccaatatgaagatacataactttcaattacatattcttcaaatt |
9278291 |
T |
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| Q |
210 |
tcctccttctaagtgatgat |
229 |
Q |
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| T |
9278292 |
ttctccttctaagtgctgat |
9278311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 28536611 - 28536541
Alignment:
| Q |
51 |
ttgaagaaatgtgttgattaacatctaaaggaaaacaccctccaaatgattcatctatttgcttcaataaa |
121 |
Q |
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||||||||| || ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
28536611 |
ttgaagaaaggtcttgattaacataaaaaggaaaaggccctccaaatgacccatctatttgcttcaataaa |
28536541 |
T |
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