View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_48 (Length: 217)
Name: NF9223_low_48
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 16308822 - 16308636
Alignment:
| Q |
29 |
tttgagaaattgtgggataactccttccaagtaaggattgtttgttacctatctaatctattattttgaattcaatatttgaaccatgtaatgttaattt |
128 |
Q |
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| T |
16308822 |
tttgagaaattgtgggataacttcttccaagtaaggattgtttgttacctatctaatctattattttgaattcaatatttgaaccatgtaatgttaattt |
16308723 |
T |
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| Q |
129 |
gcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctctg |
215 |
Q |
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| T |
16308722 |
gcatgaagagagtaagaggcaacgagaagcttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctctg |
16308636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 16299342 - 16299285
Alignment:
| Q |
156 |
agcttctgaattattaatgcttctttcttttctggtagggtcatgaagggaagttctc |
213 |
Q |
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| T |
16299342 |
agcttctgagttattgatgcttttttcttttctggtagggtcatgaggggaagttctc |
16299285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 16300396 - 16300355
Alignment:
| Q |
29 |
tttgagaaattgtgggataactccttccaagtaaggattgtt |
70 |
Q |
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| T |
16300396 |
tttgaaaaattgtgggataactttttccaagtaaggattgtt |
16300355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43414760 - 43414728
Alignment:
| Q |
1 |
ctttaaggtcacaaaagactactgtacgtttga |
33 |
Q |
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| T |
43414760 |
ctttaaggtcacaaaagactactttacgtttga |
43414728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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