View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9223_low_6 (Length: 531)
Name: NF9223_low_6
Description: NF9223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9223_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 11101280 - 11101347
Alignment:
| Q |
6 |
agacataaattctattgataacgatcatcaaagcccttgctaccataacaaacaataagatataaaat |
73 |
Q |
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| T |
11101280 |
agacataaattctattgataacgatcgtcaaagcccttgctaccataacaaacaataagatataaaat |
11101347 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 517
Target Start/End: Original strand, 11101344 - 11101387
Alignment:
| Q |
474 |
aaatgaatttttagagaaatagcaacaaggaccgtgttcatatc |
517 |
Q |
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| T |
11101344 |
aaatgaatttttagagaaatagcaacaaggaccttgttcatatc |
11101387 |
T |
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