View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9224_high_1 (Length: 449)
Name: NF9224_high_1
Description: NF9224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9224_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 155 - 433
Target Start/End: Original strand, 35146951 - 35147229
Alignment:
| Q |
155 |
ctattgattaaaagaccaaccgtaaccgtgcatgttgattttacatgtgtatggtagaattttacttttttcggtttcaattccttcattttacgtgctc |
254 |
Q |
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| T |
35146951 |
ctattgattaaaagaccaaccgtaaccgtgcatgttgattttacatgtgtatggtagaattttacttttttcggtttcaattccttcattttacgtgctc |
35147050 |
T |
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| Q |
255 |
agcttactgtgcatgagcaacaatattgattaaaatagagcatagaacaaatgcctaaaatagaccagaatttaaatcactcgaataaaattcagtctcc |
354 |
Q |
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| T |
35147051 |
agcttactgtgcatgagcaacaatattgattaaaatagagcatagaacaaatgcctaaaatataccagaatttaaatcactcgaataaaattcagtctcc |
35147150 |
T |
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| Q |
355 |
aacgttcagagttgagggttccaaatcaataaatggcagcaaattcgtattgcatcacaatatgttgacaagtaataaa |
433 |
Q |
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| T |
35147151 |
aacgttcagagttgagggttccaaatcaataaatggcagcaaattcgtattgcatcacaatatgttgacaagtaataaa |
35147229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 35146806 - 35146881
Alignment:
| Q |
7 |
tttggtggtacctcttttgctattgttatggttttataattggttgttaacaattttaatttctatccttgcactc |
82 |
Q |
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| T |
35146806 |
tttggtggtacctcttttgctattgttatggttttataattggttgttaacaattttaatttctatccttgcactc |
35146881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 299 - 414
Target Start/End: Original strand, 35190044 - 35190158
Alignment:
| Q |
299 |
gaacaaatgcctaaaatagaccagaatttaaatcactcgaataaaattcagtctccaacgttcagagttgagggttccaaatcaataaatggcagcaaat |
398 |
Q |
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| T |
35190044 |
gaaccaatgccgtaaatataccaaaatttaaatcactggaataca-ttcagtccccagcgttcagagttgagggttccaaatcaataaatggcagctaat |
35190142 |
T |
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| Q |
399 |
tcgtattgcatcacaa |
414 |
Q |
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| T |
35190143 |
tcgtattgcatcacaa |
35190158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 411
Target Start/End: Original strand, 35199600 - 35199714
Alignment:
| Q |
296 |
atagaacaaatgcctaaaatagaccagaatttaaatcactcgaataaaattcagtctccaacgttcagagttgagggttccaaatcaataaatggcagca |
395 |
Q |
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| T |
35199600 |
atagaaccaatgccttaaacagaccagaatttaaatcactggaataaa-ttcagtccccaacgatcatagttgagggttccaaatcaataatttgcagca |
35199698 |
T |
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| Q |
396 |
aattcgtattgcatca |
411 |
Q |
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| T |
35199699 |
aattcatattgcatca |
35199714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 35207943 - 35207978
Alignment:
| Q |
376 |
caaatcaataaatggcagcaaattcgtattgcatca |
411 |
Q |
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| T |
35207943 |
caaatcaataaatggcagcaaattcatattgcatca |
35207978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 35247990 - 35248039
Alignment:
| Q |
365 |
gttgagggttccaaatcaataaatggcagcaaattcgtattgcatcacaatat |
417 |
Q |
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| T |
35247990 |
gttgagggttccaaatcaataaat---agcaaattcataatgcatcacaatat |
35248039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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