View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9224_low_5 (Length: 378)
Name: NF9224_low_5
Description: NF9224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9224_low_5 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 71 - 378
Target Start/End: Original strand, 17595740 - 17596049
Alignment:
| Q |
71 |
acattattgttacttgataaaaccttttgttaccctttgagcttcatgtgcttttnnnnnnnnttacaatgcattcattagcaaaacaaaaaatcaataa |
170 |
Q |
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| T |
17595740 |
acattattgttacttgataaaaccttttgttaccctttgagcttcatgtgctttttaaaaaaattacaatgcattcattagcaaaacaaaaaatcaataa |
17595839 |
T |
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| Q |
171 |
caagggattttattttaaagaaaattatttttgtcgtcacttaatttaatttataccctagaaatctacgtactttc-nnnnnnnaaatagattcaaaga |
269 |
Q |
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| T |
17595840 |
caagggattttattttaaacaaaattattttcgtcgtcccttaacttgatttatgccctagaaatctacgtactttcttttttttaaatagattcaaaga |
17595939 |
T |
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| Q |
270 |
gcatcaattcaatataaacc-nnnnnnngtagaaaatagaaaataggaactataccaaaacttttttaaaaggtgttaaatcttaaattaggcattccca |
368 |
Q |
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| T |
17595940 |
gcatcaattcaatataaaccaaaaaagagtagaaaatagaaaatagaaactataccaaaacctttttaaaaggtgttaaatctgaaattaggcattccca |
17596039 |
T |
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| Q |
369 |
acttatttcc |
378 |
Q |
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| T |
17596040 |
acttatttcc |
17596049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17595700 - 17595752
Alignment:
| Q |
1 |
ggatgggatagaaaggtattattcatttacttgtatatacacattattgttac |
53 |
Q |
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| T |
17595700 |
ggatgggatagaaaggtattattcatttctttgtatatatacattattgttac |
17595752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 34427032 - 34427090
Alignment:
| Q |
317 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
375 |
Q |
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| T |
34427032 |
actaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctatt |
34427090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 10194016 - 10194056
Alignment:
| Q |
317 |
actataccaaaacttttttaaaaggtgttaaatcttaaatt |
357 |
Q |
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| T |
10194016 |
actataccaaaaccttttcaaaaggtgttaaatctgaaatt |
10194056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 41517773 - 41517826
Alignment:
| Q |
317 |
actataccaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaac |
370 |
Q |
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| T |
41517773 |
actataccaaaaccttttcaaaagttgcaaaatctgaaattaggcattcccaac |
41517826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 19280593 - 19280646
Alignment:
| Q |
322 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
375 |
Q |
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| T |
19280593 |
accaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatatt |
19280646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 45992488 - 45992435
Alignment:
| Q |
322 |
accaaaacttttttaaaaggtgttaaatcttaaattaggcattcccaacttatt |
375 |
Q |
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| T |
45992488 |
accaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttatt |
45992435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 44127 - 44095
Alignment:
| Q |
255 |
aaatagattcaaagagcatcaattcaatataaa |
287 |
Q |
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| T |
44127 |
aaatagatgcaaagagcatcaattcaatataaa |
44095 |
T |
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