View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9224_low_7 (Length: 306)
Name: NF9224_low_7
Description: NF9224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9224_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 33 - 289
Target Start/End: Complemental strand, 23435764 - 23435504
Alignment:
| Q |
33 |
gacacaacactaacacatagacaccagtgataatttgagaaaataaaagtgaaaatatgtaattgaaagtgctggtgttggacgacacacattcaatctg |
132 |
Q |
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| T |
23435764 |
gacacaacattaacacatatacaccggtaataatttgagaaaataaaaatgaaaatatgtaattgaaagtgctggtgttggacgacacacgttcaatctg |
23435665 |
T |
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| Q |
133 |
aagtgctag----tactacataggtcgtcggagtgattagagatggaaaaaaggaagaggttaaactgatgttgccagagaacaacataccaagttgtat |
228 |
Q |
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| T |
23435664 |
aagtgctagctagtaccacataggtcgtcggagtgattagagatggaaaaaaggaagaggttaaactgatgttgccagagaacaacataccaagttgtat |
23435565 |
T |
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| Q |
229 |
ctttagaatagaaaacaataaaagtcataaatcaacggtacgggaaaaataatctagtatt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23435564 |
ctttagaatagaaaacaataaaagtcataaatcaacggtaagggaaaaataatctagtatt |
23435504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 33 - 264
Target Start/End: Complemental strand, 23471250 - 23471019
Alignment:
| Q |
33 |
gacacaacactaacacatagacaccagtgataatttgagaaaataaaagtgaaaatatgtaattgaaagtgctggtgttggacgacacacattcaatctg |
132 |
Q |
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| T |
23471250 |
gacacaacattaacacatatacaccggtaataatttgagaaaataaaaatgaaaatatgtaattgaaagtgctggtgttggacgacacacattcaatctg |
23471151 |
T |
|
| Q |
133 |
aagtgctagtactacataggtcgtcggagtgattagagatggaaaaaaggaagaggttaaactgatgttgccagagaacaacataccaagttgtatcttt |
232 |
Q |
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| T |
23471150 |
aagtgctagtaccacataggtcgtcggagtgattagagacggaaaaaaggaagaggttaaactgatgttgccagagaacaacataccaagttatatcttt |
23471051 |
T |
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| Q |
233 |
agaatagaaaacaataaaagtcataaatcaac |
264 |
Q |
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| T |
23471050 |
agaatagaaaacaataaaagtcataaatcaac |
23471019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23435814 - 23435777
Alignment:
| Q |
1 |
catattttccttgttttgtgctacgaagcactgacaca |
38 |
Q |
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| T |
23435814 |
catattttccttgttttgtgctacgaagcactgacaca |
23435777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23471300 - 23471263
Alignment:
| Q |
1 |
catattttccttgttttgtgctacgaagcactgacaca |
38 |
Q |
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| T |
23471300 |
catattttccttgttttgtgctacgaagcactgacaca |
23471263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 43843684 - 43843637
Alignment:
| Q |
37 |
caacactaacacatagacaccagtgataatttgagaaaataaaagtga |
84 |
Q |
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| T |
43843684 |
caacactaacacgtagacaccaataataatttgagaaaataaaagtga |
43843637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
| Q |
34 |
acacaacactaacacatagacaccagtgataatttgagaaaat |
76 |
Q |
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|||| |||||||||||||||||||| | ||||||||||||||| |
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| T |
7367535 |
acacgacactaacacatagacaccaataataatttgagaaaat |
7367577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 13338727 - 13338682
Alignment:
| Q |
31 |
ctgacacaacactaacacatagacaccagtgataatttgagaaaat |
76 |
Q |
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|||||||||||||||||| | ||||||||| ||||||| ||||||| |
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| T |
13338727 |
ctgacacaacactaacacgtcgacaccagtaataatttaagaaaat |
13338682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 35335588 - 35335633
Alignment:
| Q |
39 |
acactaacacatagacaccagtgataatttgagaaaataaaagtga |
84 |
Q |
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||||| |||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
35335588 |
acactgacacatagacactagtaataatttgagaaaatgaaagtga |
35335633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 4493824 - 4493783
Alignment:
| Q |
33 |
gacacaacactaacacatagacaccagtgataatttgagaaa |
74 |
Q |
| |
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||||||||||||||||||| |||||||| || |||||||||| |
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| T |
4493824 |
gacacaacactaacacatacacaccagtaatcatttgagaaa |
4493783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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