View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9224_low_8 (Length: 232)
Name: NF9224_low_8
Description: NF9224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9224_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 23436049 - 23436264
Alignment:
| Q |
2 |
ataccaggtcatcaatggactggaacgtttggtagaagcatcgccaatggcaaaacaggttccaccagttgctctggctttcacagttggtgtgcgtttt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23436049 |
ataccaggtcatcaatggactggaacgtttggtagaagcatcgccaatggcaaaacaggttccaccagttgctctggctttcacagttggtgtgcgtttt |
23436148 |
T |
|
| Q |
102 |
gccaacaatgtttatggtggcatgcagtttgttgactgggctaggtggagtggagtacaatagtttcttcaattatcttgttttgtaatgtgttgtagtc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23436149 |
gccaacaatgtttatggtggcatgcagtttgttgactgggctaggtggagtggagtacaatagtttcttcaattatcttgttttgtaatgtgttgtagtc |
23436248 |
T |
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| Q |
202 |
ttgtagatgtaatttt |
217 |
Q |
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|||||||||||||||| |
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| T |
23436249 |
ttgtagatgtaatttt |
23436264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23471534 - 23471750
Alignment:
| Q |
1 |
gataccaggtcatcaatggactggaacgtttggtagaagcatcgccaatggcaaaacaggttccaccagttgctctggctttcacagttggtgtgcgttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
23471534 |
gataccaggtcatcaatggactggaacgtttggtagaagcatcgccaatggtaaaacaggttccaccagttgctctcgctttcacagttagtgtgcgttt |
23471633 |
T |
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| Q |
101 |
tgccaacaatgtttatggtggcatgcagtttgttgactgggctaggtggagtggagtacaatagtttcttcaattatcttgttttgtaatgtgttgtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23471634 |
tgccaacaatgtttatggtggcatgcagtttgttgactgggctaggtggagtggagtacaatagtttcttcaattatcttgttttgtaatgtgttgtagt |
23471733 |
T |
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| Q |
201 |
cttgtagatgtaatttt |
217 |
Q |
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||||||||||||||||| |
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| T |
23471734 |
cttgtagatgtaatttt |
23471750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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