View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9225_high_1 (Length: 574)
Name: NF9225_high_1
Description: NF9225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9225_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 83 - 558
Target Start/End: Complemental strand, 4639786 - 4639311
Alignment:
| Q |
83 |
cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccacttattaacacttgtttctctct |
182 |
Q |
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| T |
4639786 |
cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccacttattaacacttgtttctctct |
4639687 |
T |
|
| Q |
183 |
cttttaaataaccctcttgttctttcattttctcttccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaag |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639686 |
cttttaaataaccctcttgttctttcattttctcttccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaag |
4639587 |
T |
|
| Q |
283 |
taatggaaaccaaagatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacac |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639586 |
taatggaaaccaaagatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacac |
4639487 |
T |
|
| Q |
383 |
ccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatattaactcctcagaaatctatcatcacttcaagtgattcttc |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639486 |
ccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatattaactcctcagaaatctatcatcacttcaagtgattcttc |
4639387 |
T |
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| Q |
483 |
ttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctgtatt |
558 |
Q |
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| T |
4639386 |
ttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctgtatt |
4639311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 9e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 121 - 362
Target Start/End: Original strand, 48511429 - 48511666
Alignment:
| Q |
121 |
acacaaatgtgattacaaatgtctcttacc-tccctgccacttattaacactt-gtttctctctcttttaaataaccctcttgttctttcattttctctt |
218 |
Q |
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||||||| ||| |||||||||||||| ||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
48511429 |
acacaaacgtgcttacaaatgtctctcaccctcactgccacttattaacactttgtttttctctcttttaaataaccctcttgttctttcattttctctt |
48511528 |
T |
|
| Q |
219 |
ccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaagtaatggaaaccaaagatgaacctcaagtaatggacc |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
48511529 |
ccataaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaactt---gtaatggaaaccaaagatgaacttcaagtaatggacc |
48511625 |
T |
|
| Q |
319 |
atttgaccataccaacaacaacaacaactgggaccagtttctct |
362 |
Q |
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| T |
48511626 |
atttgaccatac---caacaacaacatctgggaccagtttctct |
48511666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 358 - 555
Target Start/End: Original strand, 48511739 - 48511939
Alignment:
| Q |
358 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaac---caccaacgtaatattaactcctcaga |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
48511739 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtgactatcaaaatgaaattcatgaaacaaccaccaacttaatattaactcctcaga |
48511838 |
T |
|
| Q |
455 |
aatctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacagctaaatccaatgtctg |
554 |
Q |
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| T |
48511839 |
aatctattatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaaccaacactggtttcaattctttgacaacaactaaatccaatgtctg |
48511938 |
T |
|
| Q |
555 |
t |
555 |
Q |
| |
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| |
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|
| T |
48511939 |
t |
48511939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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