View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9225_low_4 (Length: 499)
Name: NF9225_low_4
Description: NF9225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9225_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 26682673 - 26682949
Alignment:
| Q |
17 |
tgaggtagatcaagttgaagctatacaagggttcatcaaaagggatatgaatagaagggaaatgatggatcaaagaatagcaatgaatgaaggttataat |
116 |
Q |
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| T |
26682673 |
tgaggtagatcaagttgaagctatacaagggttcatcaaaagggatatgaatagaagggaaatgatggatcaaagaatagcaatgaatgaaggttataat |
26682772 |
T |
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| Q |
117 |
aatagaagaaaagacattgaaatgaaacaagattttgaattttcaatgcattcaggaagagatgttgaaattggtgaatattttgttggtgttacagttg |
216 |
Q |
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| T |
26682773 |
aatagaagaaaagacattgaaatgaaacaagattttgaattttcaatgcattcaggaagagatgttgaaattggtgaatattttgttggtgttacagttg |
26682872 |
T |
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| Q |
217 |
gaacaccaggtcaaaagttttggcttattgctgatacaggaagtgagttaacatggtttaaatgtatgaaaaaggtt |
293 |
Q |
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| T |
26682873 |
gaacaccaggtcaaaagttttggcttattgctgatacaggaagtgagttaacatggtttaaatgtatgaaaaaggtt |
26682949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 372 - 484
Target Start/End: Original strand, 26683031 - 26683143
Alignment:
| Q |
372 |
acaagaagaagaagggctcattctcataatccttgtgatgatgcattttgtccacatcgttctcatacatttcatcaaatttcttgtgcatctaaaatgt |
471 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26683031 |
acaacaagaagaagggctcattctcataatccttgtgatgatgcattttgtccacatcgttctcatacatttcatcaaatttcttgtgcatctaaaatgt |
26683130 |
T |
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| Q |
472 |
gcatggctgaact |
484 |
Q |
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| T |
26683131 |
gcttggctgaact |
26683143 |
T |
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