View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9225_low_5 (Length: 422)
Name: NF9225_low_5
Description: NF9225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9225_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 19809182 - 19809579
Alignment:
| Q |
19 |
atatggtctggtcagtcaccgatatctctctttttgtctctatgtttttgtattttacattatatgtttatcaaatccatattgcatttttggatcttat |
118 |
Q |
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| T |
19809182 |
atatggtctggtcagtcaccgatatctctctttttgtctctatgtttttgtattttacattatatgtttatcaaatccatattgcatttttggatcttat |
19809281 |
T |
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| Q |
119 |
catttatggtgtgttgttttggctttttattcttgttgaaaatcagtgtaaactgtgtacttatagaaattgatagaatgttgattacatgtgtaactct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19809282 |
catttatggtgtgttgttttggctttttattcttgttgaaaatcagtgtaaactgtgtacttatagaaattgatagaatgttgattacatgtgtaactct |
19809381 |
T |
|
| Q |
219 |
tatgaggtttgttatggatcttctcttgaacccattttgttagtgttatctcttgatgcttgagaaaatattatatacaacatatttgtgtgattataca |
318 |
Q |
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| T |
19809382 |
tatgaggttt-ttatggatcttctcttgaacccattttgttagtgttatctcttgatgcttgagaaaaaattatatacaacatatttgtgtgattataca |
19809480 |
T |
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| Q |
319 |
aatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaaccgtgtttcacatctgttttcttaatttggtctctgcttct |
417 |
Q |
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| T |
19809481 |
aatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaaccgtgtttcacatctgttttcttaatttggtgtctggttct |
19809579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 39138927 - 39139323
Alignment:
| Q |
21 |
atggtctggtcagtcaccgatatctctctttttgtctctatgtttttgtattttacattatatgtttatcaaatccatattgcatttttggatcttatca |
120 |
Q |
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| T |
39138927 |
atggtttggtcagtcaccggtatctctccttttgtctcaatgttttggtattttacattatatgtttatcaaatccatattgcatttttggatcttatca |
39139026 |
T |
|
| Q |
121 |
tttatggtgtgttgttttggctttttattcttgttgaaaatcagtgtaaactgtgtacttatagaaattgatagaatgttgattacatgtgtaactctta |
220 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39139027 |
tttattgtgtgttgttttgcctttttattcttgttgaaaatcagtgtaaactgtgaacttaaagaaattgatagaatgttgattacatgtgtaactctta |
39139126 |
T |
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| Q |
221 |
tgaggtttgttatggatcttctcttgaacccattttgttagtgttatctcttgatgcttgagaaaatattatatacaacatatttgtgtgattatacaaa |
320 |
Q |
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| T |
39139127 |
tgaggtttgttatggatcttctcttgaatccatattgttagtgttatctcttgatgcttgagaaaaaattatatgcaacatatttatgtgattatacaaa |
39139226 |
T |
|
| Q |
321 |
tgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaaccgtgtttcacatctgttttcttaatttggtctctgcttct |
417 |
Q |
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| T |
39139227 |
tgttcttgatgaggttcaaattttatatcctattttgagaatgtggactcttagaaccgtgtttcacatctgttttcttaatttggtgtctggttct |
39139323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 202 - 384
Target Start/End: Complemental strand, 39472500 - 39472317
Alignment:
| Q |
202 |
attacatgtgtaactcttatgaggtttgttatggatcttctcttgaacccattttgttagtgttatctcttgatgcttgagaaaata-ttatatacaaca |
300 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| || ||| ||| ||||||| || ||||||||||||||| | ||| ||| |||| |
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| T |
39472500 |
attacatttgtaactcttatgaggtttgttatggatattctctaaaatccaaattgcaagtgttagctgctgatgcttgagaaaaaaattaaataaaaca |
39472401 |
T |
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| Q |
301 |
tatttgtgtgattatacaaatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaaccgtgttt |
384 |
Q |
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| T |
39472400 |
tatttgtgtcattgtacaattgttattgaatatttttgaattttatatcctattttgagaatgtggaatcttagaaccgtgttt |
39472317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 39452469 - 39452618
Alignment:
| Q |
177 |
acttatagaaattgatagaatgttgattacatgtgtaactcttatgaggtttgttatggatcttctcttgaacccattttgttagtgttatctcttgatg |
276 |
Q |
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||||| ||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||||| || || ||| | |||| || |||||| |
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| T |
39452469 |
acttagagaaattaattgaatgttgattacaggtgtaactcttattaggtttgttatggatcttctcttaaattaatattgcaaccgttagctattgatg |
39452568 |
T |
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| Q |
277 |
cttgagaaaatattatatacaacatatttgtgtgattatacaaatgttct |
326 |
Q |
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| T |
39452569 |
cttgggaaaaaattatattcatcatatttgtgtgactgtacaaatgttct |
39452618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 39412805 - 39412699
Alignment:
| Q |
278 |
ttgagaaaatattatatacaacatatttgtgtgattatacaaatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaac |
377 |
Q |
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||||||||| |||||||||||||||| |||||||| |||| ||||| |||| ||||| ||||| |||||||| |||||||||| |||||||||||| |
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| T |
39412805 |
ttgagaaaaaattatatacaacatat--gtgtgattgtacagatgtttttgaataggtttgaatttgatatcctactttgagaatgctgaatcttagaac |
39412708 |
T |
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| Q |
378 |
cgtgtttca |
386 |
Q |
| |
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||||||||| |
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| T |
39412707 |
cgtgtttca |
39412699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 39153398 - 39153469
Alignment:
| Q |
146 |
tattcttgttgaaaatcagtgtaaactgtgtacttatagaaattgatagaatgttgattacatgtgtaactc |
217 |
Q |
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| T |
39153398 |
tattcttgtttgaaatcagtgcacactgtgaactaatagaaattgatagaatgttgattacttgtgtaactc |
39153469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 39153555 - 39153658
Alignment:
| Q |
283 |
aaaatattatatacaacatatttgtgtgattatacaaatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaaccgtgt |
382 |
Q |
| |
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|||| |||||||| ||||||||||||||| ||| ||||||||||| | |||||||||| |||| ||| ||||||||| | ||||||||||| | ||| |
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| T |
39153555 |
aaaaaattatataaaacatatttgtgtgaacgtacgaatgttcttgaatacgttcaaatttaatattctattttgagaattttgaatcttagaaacatgt |
39153654 |
T |
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| Q |
383 |
ttca |
386 |
Q |
| |
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|||| |
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| T |
39153655 |
ttca |
39153658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 39472620 - 39472583
Alignment:
| Q |
81 |
tatgtttatcaaatccatattgcatttttggatcttat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39472620 |
tatgtttatcaaatccatattgcatttttggatcttat |
39472583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 39472566 - 39472515
Alignment:
| Q |
168 |
aaactgtgtacttatagaaattgatagaatgttgattacatgtgtaactctt |
219 |
Q |
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|||||||| |||||| | ||||||||||||||||||||||||||||||||| |
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| T |
39472566 |
aaactgtgaacttatctatattgatagaatgttgattacatgtgtaactctt |
39472515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 39453330 - 39453368
Alignment:
| Q |
379 |
gtgtttcacatctgttttcttaatttggtctctgcttct |
417 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||| |
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| T |
39453330 |
gtgtttctcatctgttttcttaatttggtgtctgcttct |
39453368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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