View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9225_low_7 (Length: 332)
Name: NF9225_low_7
Description: NF9225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9225_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 156 - 317
Target Start/End: Complemental strand, 7883279 - 7883115
Alignment:
| Q |
156 |
aaacatcagtgcattgtttcaccattagatttcatttgatatgtgagagttaccacttttgtgaagtaat---ccgcagttgaatcttgatttgacatct |
252 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
7883279 |
aaacttcattgcattgtttcaccattatatttcatttgatatgtgagagttaccacttttgtgaagtaataatcagcagttgaatcttgatttgacatct |
7883180 |
T |
|
| Q |
253 |
acaacatttcatattggcgccttaaagcttgcagcttcaccttctttatcttttcatcaccacca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7883179 |
acaacatttcatattggcgccttaaagctttcagcttcaccttctttatcttttcatcaccacca |
7883115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 7883368 - 7883253
Alignment:
| Q |
19 |
tcttcatgcttggaacaaacatcgcatcacttatgacagattcatgtccatctttctttgaaccaagatatttccaatgccttgtgacaaaacttcattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7883368 |
tcttcatgcttggaacaaacatcgcatcacttatgacagattcatgtccatctttctttgaaccaagatatttccaatgccttgtgacaaaacttcattg |
7883269 |
T |
|
| Q |
119 |
cattgtttcaccatta |
134 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7883268 |
cattgtttcaccatta |
7883253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 44756356 - 44756275
Alignment:
| Q |
234 |
gaatcttgatttgacatctacaacatttcatattggcgccttaaagcttgcagcttcaccttctttatcttttcatcaccac |
315 |
Q |
| |
|
|||||||||| |||||||| | | ||||| ||||| ||||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
44756356 |
gaatcttgatctgacatctgaaggagttcatgctggcgtcttaaagcttgcaacttcaccttcttgatcttctcatcaccac |
44756275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University