View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9225_low_8 (Length: 331)
Name: NF9225_low_8
Description: NF9225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9225_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 1207188 - 1206898
Alignment:
| Q |
17 |
agaagcatcgcatgtgaacggtaaaataaataatggtttgtggtacatgattaccacagtaactgaattcgttcaaacacaaagagttattaaaaatgat |
116 |
Q |
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| T |
1207188 |
agaagcatcgcatgtgaacggtaaaataa----tggtttgtggtacatgattaccacagtaactgaattcgttcaaacacagagagttattaaaaatgat |
1207093 |
T |
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| Q |
117 |
aaaagatcttaaatgtttcaaacgaacatcaacctcatgttgaatggaaatggtgtgaagtaaaggcgcaaatacaaacacgccgtgtgcatcaacaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1207092 |
aaaagatcttaaatgtttcaaacgaacatcaacctcatgttgaatggaaatgatttgaagtaaaggcgcaaatacaaacacgcagtgtgcatcaacaaac |
1206993 |
T |
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| Q |
217 |
caagaacagtttttgacctcaattagtagtcaaaatggaccgtatactagggcaattattactccataaaaataccacaacatctcatgtctcat |
311 |
Q |
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||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1206992 |
caagaactgtttttgacctcaattagtggacaaaatggaccgtatactagggcaattattactccataaaaataccacaacatctcatgtctcat |
1206898 |
T |
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