View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9225_low_9 (Length: 239)
Name: NF9225_low_9
Description: NF9225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9225_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 45551177 - 45550969
Alignment:
| Q |
1 |
cagcccccaaggaggggttagagg-ttatgtgagaaagtggaacacagttagagtacaatgatctacttccgctgttagatgatggaattgacccagacc |
99 |
Q |
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| T |
45551177 |
cagcccccaaggaggggttagagggttatgtgagaaagtggaacacagttagagtacaatgatctaattccgctgttagatgatggaattgatccagacc |
45551078 |
T |
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| Q |
100 |
ttaaagcaaccattgcagcatccttccttaccttcagaatcatacctccagcccaaataataaacatataaatatgatcaacataaaaatatcataacaa |
199 |
Q |
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| T |
45551077 |
ttaaagcaaccattgcagcat----ccttaccttcagaatcatacctgcagcccaaataataaacatataaatatgattaacataaacatatcataacaa |
45550982 |
T |
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| Q |
200 |
ggaaacaataacc |
212 |
Q |
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||||||||||||| |
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| T |
45550981 |
ggaaacaataacc |
45550969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 45546598 - 45546426
Alignment:
| Q |
1 |
cagcccccaaggaggggttagaggttatgtgagaaagtggaacacagttagagtacaatgatctacttccgctgttagatgatggaattgacccagacct |
100 |
Q |
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|||||||||||||| ||||||||||||||| ||| |||||||||| || |||||| | |||||||||||| ||||||||||||| |||||| ||||| || |
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| T |
45546598 |
cagcccccaaggagaggttagaggttatgtaagagagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagct |
45546499 |
T |
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| Q |
101 |
taaagcaaccattgcagcatccttccttaccttcagaatcatacctccagcccaaataataaacatataaatatgat |
177 |
Q |
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| T |
45546498 |
tatagcagccattgcagcat----ccttaccttcagaatcatacctgcaacccaagtaataaacatataaatatgat |
45546426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 50134741 - 50134917
Alignment:
| Q |
16 |
ggttagaggttatgtgagaaagtggaacacagttagagtacaatgatctacttccgctgttagatgatggaattgacccagaccttaaagcaaccattgc |
115 |
Q |
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|||| |||||||||| ||||| | ||||||| | |||||||| |||| | ||||| ||| |||||||||||||| | ||| ||||||| ||||| |
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| T |
50134741 |
ggtttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgcttccattgtcggatgatggaattgaactagagcttaaagtggacattga |
50134840 |
T |
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| Q |
116 |
agcatccttccttaccttcagaatcatacctccagcccaaataataaacatataaatatgatcaacataaaaatatcataaca |
198 |
Q |
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|||||| || |||||||||||||||||| || |||||||| ||| |||||||||||| |||||||| |||||| |||| |
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| T |
50134841 |
agcatcatt----accttcagaatcatacctacataccaaataacaaa--tataaatatgattaacataaacatatcaaaaca |
50134917 |
T |
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