View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_high_4 (Length: 478)
Name: NF9226_high_4
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 227 - 398
Target Start/End: Original strand, 1386270 - 1386441
Alignment:
| Q |
227 |
catccatctcattcccattgctcatatggtgcaacccatgatgttcatatggcatatgtataggatgttgtccatcactgacctgcatccccgaatcaac |
326 |
Q |
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| T |
1386270 |
catccatctcattcccattgctcatatggtgcaacccatgatgttcatatggcatatgtataggatgttgtccatcactgacctgcatccccgaatcaac |
1386369 |
T |
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| Q |
327 |
accatgaataccatccatgtactggaagagccaaaattacctaacaaagtgacataaaagattattaatggc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1386370 |
accatgaataccatccatgtactggaagagccaaaattacctaacaaagtgacataaaagattattaatggc |
1386441 |
T |
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