View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9226_high_7 (Length: 374)

Name: NF9226_high_7
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9226_high_7
NF9226_high_7
[»] chr4 (6 HSPs)
chr4 (1-359)||(41328727-41329086)
chr4 (1-44)||(44111745-44111788)
chr4 (1-44)||(28020481-28020524)
chr4 (1-44)||(32714269-32714312)
chr4 (1-44)||(48361157-48361200)
chr4 (3-40)||(48195997-48196034)
[»] chr7 (11 HSPs)
chr7 (1-44)||(13807343-13807386)
chr7 (1-44)||(11668015-11668058)
chr7 (1-44)||(28677317-28677360)
chr7 (1-38)||(28298959-28298996)
chr7 (1-44)||(2680858-2680901)
chr7 (1-40)||(30869190-30869229)
chr7 (1-44)||(36245376-36245419)
chr7 (1-31)||(39153300-39153330)
chr7 (1-30)||(2399966-2399995)
chr7 (1-30)||(2523784-2523813)
chr7 (1-30)||(6838480-6838509)
[»] chr6 (4 HSPs)
chr6 (1-44)||(17265721-17265764)
chr6 (4-44)||(21162400-21162440)
chr6 (1-30)||(30895289-30895318)
chr6 (1-33)||(30627928-30627960)
[»] chr3 (6 HSPs)
chr3 (1-44)||(8266336-8266379)
chr3 (3-44)||(51517064-51517105)
chr3 (1-44)||(53441907-53441950)
chr3 (1-31)||(43343551-43343581)
chr3 (1-33)||(9197092-9197124)
chr3 (4-44)||(13622487-13622527)
[»] chr2 (12 HSPs)
chr2 (1-44)||(30761483-30761526)
chr2 (1-44)||(33273970-33274013)
chr2 (1-40)||(11030196-11030235)
chr2 (1-44)||(12962810-12962853)
chr2 (5-44)||(36881533-36881572)
chr2 (1-31)||(2936398-2936428)
chr2 (2-44)||(9152379-9152421)
chr2 (1-39)||(28494809-28494847)
chr2 (5-49)||(25891939-25891983)
chr2 (4-40)||(28014381-28014417)
chr2 (1-33)||(28248944-28248976)
chr2 (5-49)||(41153220-41153264)
[»] chr1 (9 HSPs)
chr1 (1-44)||(2351133-2351176)
chr1 (1-44)||(26924318-26924361)
chr1 (4-44)||(15286009-15286049)
chr1 (1-44)||(519833-519876)
chr1 (1-44)||(38040276-38040319)
chr1 (1-36)||(38737939-38737974)
chr1 (1-31)||(26760186-26760216)
chr1 (1-31)||(34332581-34332611)
chr1 (4-40)||(44939070-44939106)
[»] chr5 (10 HSPs)
chr5 (1-42)||(5002142-5002183)
chr5 (1-44)||(13789732-13789775)
chr5 (1-44)||(18391498-18391541)
chr5 (1-44)||(22102013-22102056)
chr5 (1-44)||(33478212-33478255)
chr5 (1-44)||(38394533-38394576)
chr5 (1-31)||(18473580-18473610)
chr5 (2-44)||(29299464-29299506)
chr5 (1-46)||(11142468-11142513)
chr5 (4-44)||(3813970-3814010)
[»] chr8 (7 HSPs)
chr8 (4-44)||(13013970-13014010)
chr8 (1-44)||(7693033-7693076)
chr8 (1-40)||(16448793-16448832)
chr8 (1-31)||(5031569-5031599)
chr8 (1-31)||(35149681-35149711)
chr8 (4-33)||(16008534-16008563)
chr8 (1-30)||(32597512-32597541)
[»] scaffold0001 (1 HSPs)
scaffold0001 (4-44)||(156768-156808)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 41328727 - 41329086
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagtctaatctcttcattaatgaacatgtatctcatttgatt-atccgtttaatgattca 99  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  41328727 atcaaaaaagtcaaatatttcttataaatagaatcggaaggaatctaatctcttcattaatgaacatgtatctcgtttgatttatccgtttaatgattca 41328826  T
Q  100 gtttaagtctaaaaattgggttgatttactattagagctagtgataaacacacgcaatctgacctaactcgtattttatacacctctgatctgactaatg 199  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||    
T  41328827 gtttaagtctaaaaattaggttgatttattattagagttagtgataaacacacgcaatctgatctaactcgtcttttatacatctctgatctgactaatg 41328926  T
Q  200 taacactatatgtgcgtataaacatgtgcaacacaggttgatcttaaaaacaagttaatagaagaaaaagtataaagtattcatttagatcacgtaacac 299  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41328927 taacactatatatgcatataaacatgtgcaacacaggttaatcttaaaaacaagttaatagaagaaaaagtataaagtattcatttagatcacgtaacac 41329026  T
Q  300 tagtatgactttgaattgatagatacttgaacttgagtagtcgaaccgggactatattgt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41329027 tagtatgactttgaattgatagatacttgaacttgagtagtcgaaccgggactatattgt 41329086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44111788 - 44111745
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  44111788 atcaaaaaagtcaaatgtttcttataaataggaccggagggagt 44111745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28020524 - 28020481
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||| |||| |||||||||||||||||||||| ||||    
T  28020524 atcaaaaaagtaaaatatttcttataaatagaatcggagagagt 28020481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32714312 - 32714269
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||||||||||||||||| || |||| |||||    
T  32714312 atcaaaaaagtcaaatgtttcttataaataaaaccggaaggagt 32714269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 48361157 - 48361200
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| |  |||||||||    
T  48361157 atcaaaaaagtcaaatgtttcttataaataggacaggagggagt 48361200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 48195997 - 48196034
Alignment:
Q  3 caaaaaagtcaaatgtttcttataaatagaatcggagg 40  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  48195997 caaaaaagtcaaatgtttcttataaataggaccggagg 48196034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13807343 - 13807386
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  13807343 atcaaaaaagtcaaatgtttcttataaatagaaccggagggagt 13807386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11668058 - 11668015
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  11668058 atcaaaaaagtcaaatgtttcttataaataggaccggagggagt 11668015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28677360 - 28677317
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  28677360 atcaaaaaagtcaaatgtttcttataaataggaccggagggagt 28677317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28298959 - 28298996
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcgga 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  28298959 atcaaaaaagtcaaatgttttttataaatagaatcgga 28298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2680901 - 2680858
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||| |||||||||||||| |||| |||||||    
T  2680901 atcaaaaaagtcaaatatttcttataaataggatcgaagggagt 2680858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30869229 - 30869190
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagg 40  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30869229 atcaaaaacgtcaaatgtttcatataaatagaatcggagg 30869190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36245419 - 36245376
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||||||||||||||| || | ||||||||||    
T  36245419 atcaaaaaagtcaaatgtttcttataaacaggaccggagggagt 36245376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 39153330 - 39153300
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  39153330 atcaaaaaagtcaaatgtttcttataaatag 39153300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2399995 - 2399966
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaata 30  Q
    ||||||||||||||||||||||||||||||    
T  2399995 atcaaaaaagtcaaatgtttcttataaata 2399966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2523813 - 2523784
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaata 30  Q
    ||||||||||||||||||||||||||||||    
T  2523813 atcaaaaaagtcaaatgtttcttataaata 2523784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6838480 - 6838509
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaata 30  Q
    ||||||||||||||||||||||||||||||    
T  6838480 atcaaaaaagtcaaatgtttcttataaata 6838509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17265764 - 17265721
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| |||||| |||||    
T  17265764 atcaaaaaagtcaaatgtttcttataaataggatcggaaggagt 17265721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 21162440 - 21162400
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  21162440 aaaaaagttaaatgtttcttataaatagattcggagggagt 21162400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30895289 - 30895318
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaata 30  Q
    ||||||||||||||||||||||||||||||    
T  30895289 atcaaaaaagtcaaatgtttcttataaata 30895318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30627928 - 30627960
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaa 33  Q
    |||| ||||||||||||||||||||||||||||    
T  30627928 atcagaaaagtcaaatgtttcttataaatagaa 30627960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8266336 - 8266379
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  8266336 atcaaaaaagtcaaatgtttcttataaataggaccggagggagt 8266379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 51517064 - 51517105
Alignment:
Q  3 caaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  51517064 caaaaaagtcaaatgtttcttataaataggaccggagggagt 51517105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 53441950 - 53441907
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||    
T  53441950 atcaaaaaagtaaaatgtttcttataaataggaccggagggagt 53441907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 43343551 - 43343581
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  43343551 atcaaaaaagtcaaatgtttcttataaatag 43343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9197124 - 9197092
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  9197124 atcaaaaaagtcaaatatttcttataaatagaa 9197092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 13622527 - 13622487
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||||||||||||||| | ||| ||||||    
T  13622527 aaaaaagtcaaatgtttcttataaataggaccggtgggagt 13622487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30761483 - 30761526
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  30761483 atcaaaaaagtcaaatgtttcttataaataggaccggagggagt 30761526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33274013 - 33273970
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  33274013 atcaaaaaagtcaaagttttcttataaatagaatcggagggagt 33273970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11030235 - 11030196
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagg 40  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  11030235 atcaaaaaagtcaaatgtttcttatatataggatcggagg 11030196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12962810 - 12962853
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | | ||||||||    
T  12962810 atcaaaaaagtcaaatgtttcttataaataggaccagagggagt 12962853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 36881572 - 36881533
Alignment:
Q  5 aaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  36881572 aaaaagtcaaatttttcttataaatagaaccggagggagt 36881533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2936398 - 2936428
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  2936398 atcaaaaaagtcaaatgtttcttataaatag 2936428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 9152421 - 9152379
Alignment:
Q  2 tcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||||||||| ||||||| | ||||||||||    
T  9152421 tcaaaaaagtcaaatgtttcttgtaaataggaccggagggagt 9152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28494809 - 28494847
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggag 39  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  28494809 atcaaaaaaatcaaatgtttcttataaatagaaccggag 28494847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 25891983 - 25891939
Alignment:
Q  5 aaaaagtcaaatgtttcttataaatagaatcggagggagtctaat 49  Q
    |||||||||| ||| |||||||||||| |||||||||||| ||||    
T  25891983 aaaaagtcaactgtctcttataaataggatcggagggagtataat 25891939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 28014381 - 28014417
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagg 40  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  28014381 aaaaaggtcaaatgtttcttataaataggatcggagg 28014417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28248976 - 28248944
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  28248976 atcaaaaaagtcaaatatttcttataaatagaa 28248944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 41153220 - 41153264
Alignment:
Q  5 aaaaagtcaaatgtttcttataaatagaatcggagggagtctaat 49  Q
    |||||||||| | |||||||||||||| |||||||||||| ||||    
T  41153220 aaaaagtcaactttttcttataaataggatcggagggagtataat 41153264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2351176 - 2351133
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  2351176 atcaaaaaagttaaatgtttcttataaataggatcggagggagt 2351133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26924318 - 26924361
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  26924318 atcaaaaaagtcaaatgtttcttataaataggaccggagggagt 26924361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 15286049 - 15286009
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  15286049 aaaaaagtcaaatgtttcttataaatataatcggagcgagt 15286009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 519876 - 519833
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||||||| |||||||||| | ||||||||||    
T  519876 atcaaaaaagtcaaatgtttattataaataggaccggagggagt 519833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38040319 - 38040276
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||||||||||||||||| | || |||||||    
T  38040319 atcaaaaaagtcaaatgtttcttataaataggaccgaagggagt 38040276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38737974 - 38737939
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcg 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38737974 atcaaaaaagtcaaatgtttcttataaataggatcg 38737939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26760216 - 26760186
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  26760216 atcaaaaaagtcaaatgtttcttataaatag 26760186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 34332581 - 34332611
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  34332581 atcaaaaaagtcaaatgtttcttataaatag 34332611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 44939106 - 44939070
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagg 40  Q
    |||||||||||||||||||||||||||| | ||||||    
T  44939106 aaaaaagtcaaatgtttcttataaataggaccggagg 44939070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5002183 - 5002142
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggaggga 42  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  5002183 atcaaaaaagtcaaatgtttcttataaataggaccggaggga 5002142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13789775 - 13789732
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||    
T  13789775 atcaaaaaagtaaaatgtttcttataaataggaccggagggagt 13789732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18391541 - 18391498
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||    
T  18391541 atcaaaaaagtcaaatgcttctcctaaatagaatcggagggagt 18391498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22102013 - 22102056
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||| |||||||||||||  ||||||||||||    
T  22102013 atcaaaaaagtcaaatatttcttataaatatgatcggagggagt 22102056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33478212 - 33478255
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  33478212 atcaaaaatgtcaaatgtttcttataaataggaccggagggagt 33478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38394533 - 38394576
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||    
T  38394533 atcaaaaaagtaaaatgtttcttataaataggatcgaagggagt 38394576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18473580 - 18473610
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  18473580 atcaaaaaagtcaaatgtttcttataaatag 18473610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 29299464 - 29299506
Alignment:
Q  2 tcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||||||||||||||||||||| ||| | ||||||||||    
T  29299464 tcaaaaaagtcaaatgtttcttataactaggaccggagggagt 29299506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11142468 - 11142513
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagtct 46  Q
    ||||||||| | || ||||||||||||||| |||||||||||||||    
T  11142468 atcaaaaaaatgaattgtttcttataaatataatcggagggagtct 11142513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 3814010 - 3813970
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||| |||||||||| ||||||||||||||||| |||||    
T  3814010 aaaaaaatcaaatgttttttataaatagaatcggatggagt 3813970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 13014010 - 13013970
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  13014010 aaaaaagtaaaatgtttcttataaataggatcggagggagt 13013970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7693076 - 7693033
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    ||||||||||| ||||||||||||||||||| || |||||||||    
T  7693076 atcaaaaaagtaaaatgtttcttataaataggattggagggagt 7693033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16448832 - 16448793
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatagaatcggagg 40  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  16448832 atcaaaaaagtcaaatgtttcttataaataggaccggagg 16448793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5031569 - 5031599
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  5031569 atcaaaaaagtcaaatgtttcttataaatag 5031599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35149711 - 35149681
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaatag 31  Q
    |||||||||||||||||||||||||||||||    
T  35149711 atcaaaaaagtcaaatgtttcttataaatag 35149681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 16008563 - 16008534
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaa 33  Q
    ||||||||||||||||||||||||||||||    
T  16008563 aaaaaagtcaaatgtttcttataaatagaa 16008534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32597541 - 32597512
Alignment:
Q  1 atcaaaaaagtcaaatgtttcttataaata 30  Q
    ||||||||||||||||||||||||||||||    
T  32597541 atcaaaaaagtcaaatgtttcttataaata 32597512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 156808 - 156768
Alignment:
Q  4 aaaaaagtcaaatgtttcttataaatagaatcggagggagt 44  Q
    |||||||| ||||||||||||||||||| | ||||||||||    
T  156808 aaaaaagttaaatgtttcttataaataggaccggagggagt 156768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University