View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_1 (Length: 1023)
Name: NF9226_low_1
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 619 - 1005
Target Start/End: Complemental strand, 12828232 - 12827844
Alignment:
| Q |
619 |
ggtttcgccttcatgctactgagccgactgggtctctttttgtcatcacttgttgggaaatttggaaacctaggaac--gaagagatcttccaagcaaat |
716 |
Q |
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| T |
12828232 |
ggtttcgccttcatgctactgggccgactgggtctctttttgtcatcacttgttgggaaatttggaaagctaggaacacgaagagatctttcaagcaaat |
12828133 |
T |
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| Q |
717 |
agaaagcctacatggttgattgttaattctatatttaacactcgtaattttattttgcaggttttgaatacaacctctgctatgacaaacatcattcgac |
816 |
Q |
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| T |
12828132 |
agaaagcctacatggttgattgttaattgtatatttaacactcgtaattttattttgcaggttttgcatacaacctctgctaggacaaacatcattcgac |
12828033 |
T |
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| Q |
817 |
atattgcgtggcaccccccaactgctcctggtctcaagataaatgtagttggaagttccttcggtaatcgaggtcgtgctggttttggtggtcttattcg |
916 |
Q |
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| T |
12828032 |
agattgcgtggcaccccccaactgctcctggtctcaagataaatgtagatggaagttccttcggtaatccaggtcgtgctggttttggtggtcttattcg |
12827933 |
T |
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| Q |
917 |
caatgatgttggaggatggatccatgggttctctaaatcttgtggtcgtgtttctaaccttcttgctgagctctatgccatcctcaatg |
1005 |
Q |
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| T |
12827932 |
caatgatgttggaggatggatccatggtttctctgaatcttgtggtcgtgtttctaaccttcttgttgagctctatgccatcctcaatg |
12827844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 12830545 - 12830410
Alignment:
| Q |
13 |
attatacttgtcacttttattcattaatatttgtaagaattttgtccttttattctattaacttgcaacataatcattttcggttttagtgatattaaat |
112 |
Q |
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| T |
12830545 |
attatacttgtcacttttattcattaatatttgtaagaattttgtccttttattctattaacttgcaaaataatcattttcggttttagtgatattaaat |
12830446 |
T |
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| Q |
113 |
ttgtagtgttcatattagtgatacttgcctcaaggt |
148 |
Q |
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| T |
12830445 |
ttgtagtgttcatattagtgatacttgcctcaaggt |
12830410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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