View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_15 (Length: 470)
Name: NF9226_low_15
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_15 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 45 - 464
Target Start/End: Original strand, 124369 - 124788
Alignment:
| Q |
45 |
ttcccctgtacatatatagaatttttatgatcagtttgttattaaaccacaatgatattatctaaataacataagaataggatcgtactgtaagtctttc |
144 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124369 |
ttcccctgtacatatatagaatttttatgatcagattgttattaaaccacaatgatattatctaaataacataagaataggatcgtactgtaagtctttc |
124468 |
T |
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| Q |
145 |
atccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaagcacatcacaaatt |
244 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124469 |
atccaaaagttgatttgaattttcctagatcgaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaagcacatcacaaatt |
124568 |
T |
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| Q |
245 |
cgtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacctataaggacatcgggccttagtacgcccttctttatcatatc |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
124569 |
cgtattaaatacaaaatgcattaaacaaaagcttaattaaaagaatgatgatttaacctataaggacatcgggccttagtacgcccttctttatcatatc |
124668 |
T |
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| Q |
345 |
aaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatagttgttgcagcattaaacaccagcctaaacttatgattagtt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
124669 |
aaattccttgaagcagaatggtggtttgggtatgtcatgtttatcgatgctatcgatagttgttgcaacattaaacaccagcctaaacttatgattagtt |
124768 |
T |
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| Q |
445 |
gctttgatgtccatctcatt |
464 |
Q |
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| T |
124769 |
gctttgatggtcatctcatt |
124788 |
T |
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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 23699617 - 23699709
Alignment:
| Q |
138 |
gtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatcaa |
230 |
Q |
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| T |
23699617 |
gtctttcatccagaagttgatttgtattttcctagatccaggtacagtttgagtgtatcctaattcatgaaatactccaatgacatctatcaa |
23699709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 23699791 - 23699885
Alignment:
| Q |
295 |
atttaacctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtc |
389 |
Q |
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| T |
23699791 |
attttacctataaggacatctggccttactattcccttcttgatctcatcaaactccttgaaactgaatgatggtctaggtatgtcatgtttgtc |
23699885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 22079326 - 22079433
Alignment:
| Q |
129 |
gtactgtaagtctttcatccaaaagttgatttgaattttcctagatccaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatc |
228 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22079326 |
gtactttaagtctttcatccaaaagttgatttgtattttcctagatccagcttgagtctgattgtatcctaattcatgaaaggctccaatgacatctatc |
22079425 |
T |
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| Q |
229 |
aagcacat |
236 |
Q |
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|| ||||| |
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| T |
22079426 |
aaacacat |
22079433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 449
Target Start/End: Original strand, 22079490 - 22079639
Alignment:
| Q |
300 |
acctataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatca |
399 |
Q |
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|||||| |||||||| ||||||||| | |||||||| ||| |||||| ||||| ||| ||| | ||||||||| |||||||| ||||| ||| | ||| |
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| T |
22079490 |
acctattaggacatctggccttagtgctcccttcttgatctcatcaaagtccttaaagttgaaagatggtttgggaatgtcatgcttgtcaatgttgtca |
22079589 |
T |
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| Q |
400 |
atagttgttgcagcattaaacaccagcctaaacttatgattagttgcttt |
449 |
Q |
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| T |
22079590 |
acacttgttccaccattaaacaccaaccaaaatggatgatcagttgcttt |
22079639 |
T |
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