View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_16 (Length: 425)
Name: NF9226_low_16
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 8296638 - 8296504
Alignment:
| Q |
43 |
atttctgtaaatttattgtcttccatgaggccccttcatattttataagagcttctaatatagtttgtgctcctttttcattttccctaaaaattaggaa |
142 |
Q |
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| T |
8296638 |
atttatgtaaatttattgtcttccctgaggccccttcatattttataagagcttctaatatagtttgtgcttctttttcattttccccacaaaataggaa |
8296539 |
T |
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| Q |
143 |
acagttgtcagcacattataagtgtgtcaggagtg |
177 |
Q |
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| T |
8296538 |
acagttgtcagcatattataagtgtgtaaggagtg |
8296504 |
T |
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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 299 - 402
Target Start/End: Complemental strand, 14343568 - 14343465
Alignment:
| Q |
299 |
tgtaaaccaataccatcaccatttacaagcacttgatatttcacattagccatacaaattcccattcatttcacccacttctcatcaaaacccatctttc |
398 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||| | |
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| T |
14343568 |
tgtaaaccaataccatcattgtttacaagcacttgatacttcacattagccatacaaatttccatccatttcacccacttctcatcgaaccccatcttcc |
14343469 |
T |
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| Q |
399 |
tcat |
402 |
Q |
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|||| |
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| T |
14343468 |
tcat |
14343465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 15163048 - 15163156
Alignment:
| Q |
275 |
gtcgtaagcctttaccaggatccctgtaaaccaataccatcaccatttacaagcacttgatatttcacattagccatacaaattcccattcatttcaccc |
374 |
Q |
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| T |
15163048 |
gtcgtaagcctcttccaggatct-tataaaccaataccatcaccatttacaaacacttgatattttacattatccatacaaattcccattcatgtcaccc |
15163146 |
T |
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| Q |
375 |
acttctcatc |
384 |
Q |
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| T |
15163147 |
atttctcatc |
15163156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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