View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9226_low_18 (Length: 399)

Name: NF9226_low_18
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9226_low_18
NF9226_low_18
[»] chr2 (6 HSPs)
chr2 (163-280)||(33092386-33092497)
chr2 (14-114)||(33092911-33093014)
chr2 (340-383)||(33082348-33082391)
chr2 (340-383)||(33092208-33092251)
chr2 (340-383)||(33099704-33099747)
chr2 (340-383)||(33072612-33072655)
[»] chr5 (1 HSPs)
chr5 (340-383)||(3931497-3931540)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 33092497 - 33092386
Alignment:
Q  163 aagcggaatctttagttggatgcatagtagtaagttgcaactatagatatattttacataggaataggaaaatgttgtgtacacttcattggagtgtgta 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||||||||||||    
T  33092497 aagcggaatctttagttggatgcatagtagtaagttgcaactatagatatattttacata------ggaaaatgttgtgtacacttgattggagtgtgta 33092404  T
Q  263 caacttaagataaagaga 280  Q
    || |||||||||||||||    
T  33092403 caccttaagataaagaga 33092386  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 33093014 - 33092911
Alignment:
Q  14 acctgtgtaataggatttcataaacaaataaatgtaggtataagaattttctttttt---aggaaaaatgtaggtataggatgtattcacgattttattg 110  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||| ||||||||||||    
T  33093014 acctgtgtaataggctttcataaataaataaatgtaggtataagaattttttttttttttaggaaaaatgtaggtataggatgtatttacgattttattg 33092915  T
Q  111 cggt 114  Q
    ||||    
T  33092914 cggt 33092911  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 33082391 - 33082348
Alignment:
Q  340 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33082391 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 33082348  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 33092251 - 33092208
Alignment:
Q  340 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33092251 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 33092208  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 33099747 - 33099704
Alignment:
Q  340 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33099747 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 33099704  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 33072655 - 33072612
Alignment:
Q  340 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 383  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  33072655 gaagaagaatgattctgagaagggtgaagctattgctaagaagg 33072612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 3931540 - 3931497
Alignment:
Q  340 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3931540 gaagaagaatgatcctgagaagggtgaagctattgctaaaaagg 3931497  T

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