View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_19 (Length: 385)
Name: NF9226_low_19
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 48179827 - 48179468
Alignment:
| Q |
12 |
atggacatcacaatcattttcttttgtaacttttggtgtaatcggtgagtgagttgaatttcacgtaagataaacgaagtagcttcaaattaaatcaagg |
111 |
Q |
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| T |
48179827 |
atggacatcacaatcattttcttttgtaacttttggtgtaatcggtgagtgagttgaatttcacgtaagataaacgaagtagcttcaaattaaatcaagg |
48179728 |
T |
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| Q |
112 |
gatagtatatatactatttgttttatatatatgtttgagcatgcttttagaaaacataagtccgacattggtgtgtcacttttgagacc-aaaatttgaa |
210 |
Q |
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| T |
48179727 |
gatagtatatatactatttgttttatatatatgtttgagcatgcttttagaaaacataagtccgacattggtgtgtcacttttgagaccaaaaatttgaa |
48179628 |
T |
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| Q |
211 |
ttgctttcaacaattgaaagatgtaacccaactatctttgtctgtcatttgttttatgttattatgtaaagactcatattcatacacgatttctgattgc |
310 |
Q |
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| T |
48179627 |
ttgctttcaacaattgaaagatgtaacccaactatctttgtctgtcatttgttttatgttattatgtaaagactcatattcatacacgatttctgattgc |
48179528 |
T |
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| Q |
311 |
atgcctgttataatcaaacaatccagctctcgtgatgttttgatcctttggatttccaac |
370 |
Q |
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| T |
48179527 |
atgcctgttataatcaaacaatccagctctcgtgatgttttgatcctttggatttccaac |
48179468 |
T |
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