View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_2 (Length: 867)
Name: NF9226_low_2
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 587
Target Start/End: Complemental strand, 4109982 - 4109402
Alignment:
| Q |
15 |
cagagagggttgtggtttaatgttttagctgctaaatatggggttgaagaggatcttataaggagaggggaagaatgacatcaatgtggtggaaaaattt |
114 |
Q |
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| T |
4109982 |
cagagagggttgtggtttaatgttttagctgctaaatatgaggttgaagaggatcttataaggagaggggaagaatgacatcaatgtggtggaagaattt |
4109883 |
T |
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| Q |
115 |
atgtttgattggaaagagcatagaaggtggcgaagagagttggtttaaggaaggggttatgcatattattgataatagatataattcttctttatggagt |
214 |
Q |
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| T |
4109882 |
atgtttgattggaaagagcatagaaggtggcgaagatagttggtttaaggaaggggttatgcacattattgataacatatataatacttctttatggagt |
4109783 |
T |
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| Q |
215 |
aatccttggttggatggtgggtgcttgaggactacgtataggagtctttctgatttgtgtgttga-------tagtggtgtgacagtagttggtagtgtc |
307 |
Q |
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| T |
4109782 |
aatccttggtttg--ggtgggtgcttgaggactaggtctaggagtctttctgatttgtgtgttgagtgttgatagtggtgtgacagtagttggtagtgtc |
4109685 |
T |
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| Q |
308 |
tgaaatcttgttttgcgaaggatgggaattctccatgtcaaccatgccaacatttggtgatcatgctttgtaacttggaggtgcgtcgtataaagggaaa |
407 |
Q |
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| T |
4109684 |
tgaaatcttgttttaggaaggatgggaattctccatgtcaaccatgccgacatttggtgatcatgctttgtaacttggaggtgcgtcgtataaaggaaaa |
4109585 |
T |
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| Q |
408 |
aaa---gagagtttatgagcgtcctttcttgttcagtagaaataccacatacttatatctctatcaaataagaaaactcatatcttccatagtcatccat |
504 |
Q |
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| T |
4109584 |
aaaaaagagagtttatgagcgtccttttttgtttagtagaaataccacatacttatatttctatcaaataagaaaactcatatcttctatagtcatccat |
4109485 |
T |
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| Q |
505 |
ctatcctcaagtgatggacccgttccagcaagagccagagtgtgtttgacctgtctgaatccattatttgttcgaaacatgca |
587 |
Q |
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| T |
4109484 |
ctatcctcaagtgatggacccgttctagcaggagctagagtatgtttgacctgtctgaatccattatttgttcgaaacatgca |
4109402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 773 - 849
Target Start/End: Complemental strand, 4098771 - 4098695
Alignment:
| Q |
773 |
atgtgcgatgtgtttatttagttccaagaactctacataaattatccatcctcatcgttatccacttggtggcaaat |
849 |
Q |
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| T |
4098771 |
atgtgcgatgtgtttatttagttccaagaactctacataaattatccatcctcatcgttatccacttggtggcaaat |
4098695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 602 - 658
Target Start/End: Complemental strand, 4098910 - 4098854
Alignment:
| Q |
602 |
aaatctaggtttaggtgttgtatgacctaataagctttaagaacaaccaattttagg |
658 |
Q |
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| T |
4098910 |
aaatctaggtttaggtgttgtatgacctaataagctttaagaacaaccaattttagg |
4098854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 13808350 - 13808265
Alignment:
| Q |
23 |
gttgtggtttaatgttttagctgctaaatatggggttgaagaggatcttataaggagaggggaagaatgacatcaatgtggtggaaa |
109 |
Q |
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| T |
13808350 |
gttgtggtttaaaatgttagctactaagtatggg-ttgaagagggtcgtattaggagaggggaagaaaggcctcaatgtggtggaaa |
13808265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 20546706 - 20546661
Alignment:
| Q |
602 |
aaatctaggtttaggtgttgtatgacctaataagctttaagaacaa |
647 |
Q |
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| T |
20546706 |
aaatctagatttaggtgttgcatgacctaataaattttaagaacaa |
20546661 |
T |
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