View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_24 (Length: 357)
Name: NF9226_low_24
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 17165564 - 17165357
Alignment:
| Q |
27 |
cattgttgctttgaaatatgtcatcttagtcctctatcgtctaatgaatatattggtttgaatatttgcatgaacattgttcttgtaacacactaattag |
126 |
Q |
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|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17165564 |
cattcttgccttgaaatatgtcatcttagtgctctatcgtctaatgaatatattggtttgaatatttgcatgaacattgttcttgtaacacactaattag |
17165465 |
T |
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| Q |
127 |
ttaagtagatttccttgataatgtcaatc-ttttatttgtaagtctcgtttcccaatcctgtaaccttttgtctcttttgatcttcaatataacatggta |
225 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||| | ||| ||||| ||||||||| || |
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| T |
17165464 |
ttaagtagatttccttgataatgtcaatctttttatttgtaagtctcatttcccaatcatgtaaccgattgtcccattttatcttaaatataacacagtg |
17165365 |
T |
|
| Q |
226 |
agtgatta |
233 |
Q |
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|||||||| |
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| T |
17165364 |
agtgatta |
17165357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 17129987 - 17129870
Alignment:
| Q |
20 |
tctcgaccattgttgctttgaaatatgtcatcttagtcctctatcgtctaatgaatatattggtttgaatatttgcatgaacattgttcttgtaacacac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17129987 |
tctcgaccattgttgctttgaaatatgtcatcttagtgctctatcgtctaatgaatatattggtttgaatatttgcatgaacattgttcttgtaacacac |
17129888 |
T |
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| Q |
120 |
taattagttaagtagatt |
137 |
Q |
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|||||||||||||||||| |
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| T |
17129887 |
taattagttaagtagatt |
17129870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 19971991 - 19971855
Alignment:
| Q |
96 |
atgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatcttttatttgtaagtctcgtttcccaatcctgtaacctttt |
195 |
Q |
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| T |
19971991 |
atgaacattgttcttgtaacactctaattaggtgagtagatttccttcataatgttaatcttttatttgtaagtctcttctcccaatcctgcaacctttt |
19971892 |
T |
|
| Q |
196 |
gtctcttttgatcttcaatataacatggtaagtgatt |
232 |
Q |
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||||| ||||||||||||||||||||||| ||||||| |
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| T |
19971891 |
gtctcatttgatcttcaatataacatggtgagtgatt |
19971855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 17129821 - 17129725
Alignment:
| Q |
251 |
caatcaggaaaatataatgatcaaatcgattctggatttggttttggtgatgtggtagctaccacatgagacctatatcaaactggtagaagaataa |
347 |
Q |
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| T |
17129821 |
caatcaggaaaatataatgatcaaatcgattctggatttggttttggtgatgtggtagctgccacatgagacctatatcaaactggtagaagaataa |
17129725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 19972447 - 19972398
Alignment:
| Q |
36 |
tttgaaatatgtcatcttagtcctctatcgtctaatgaatatattggttt |
85 |
Q |
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| T |
19972447 |
tttgaaatatgtcatcttagggctctatcgtctaatgaatatattggttt |
19972398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 19971795 - 19971705
Alignment:
| Q |
251 |
caatcaggaaaatataatgatcaaatcgattctggatttggttttggtgatgtggtagctaccacatgagacctatatcaaactggtagaa |
341 |
Q |
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||||||||||| |||||| ||| |||||||| |||||| || ||| || | ||| |||| |||||||||||||||||||||| |||||| |
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| T |
19971795 |
caatcaggaaagtataattatctaatcgattttggattgggatttagtactctggcagctggcacatgagacctatatcaaactagtagaa |
19971705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 4286553 - 4286489
Alignment:
| Q |
93 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
157 |
Q |
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|||||||||||||||||||| |||||| || ||| ||||||||||| | |||||| ||| |||| |
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| T |
4286553 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
4286489 |
T |
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