View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9226_low_27 (Length: 342)

Name: NF9226_low_27
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9226_low_27
NF9226_low_27
[»] chr3 (1 HSPs)
chr3 (15-324)||(8377311-8377643)
[»] chr8 (2 HSPs)
chr8 (15-324)||(7094158-7094490)
chr8 (15-324)||(7097891-7098223)
[»] chr1 (7 HSPs)
chr1 (197-324)||(33885923-33886052)
chr1 (197-324)||(33958200-33958329)
chr1 (234-324)||(22362538-22362628)
chr1 (121-203)||(33886074-33886156)
chr1 (121-203)||(33958096-33958178)
chr1 (212-323)||(14097484-14097600)
chr1 (208-323)||(41314476-41314593)
[»] chr4 (1 HSPs)
chr4 (196-322)||(11993047-11993173)
[»] chr7 (3 HSPs)
chr7 (208-323)||(2186887-2187003)
chr7 (210-323)||(19633140-19633254)
chr7 (208-323)||(1609045-1609160)
[»] chr5 (3 HSPs)
chr5 (195-275)||(14276864-14276942)
chr5 (208-323)||(37627611-37627728)
chr5 (208-323)||(37806734-37806851)
[»] scaffold0627 (1 HSPs)
scaffold0627 (291-324)||(2963-2996)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 8377643 - 8377311
Alignment:
Q  15 caagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacagctcttaagatttccaccaacagtctttactctatcga 114  Q
    ||||||| ||||||||||||||       |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8377643 caagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaacagcagctcttaagatttccaccaacagtctttactctatcga 8377544  T
Q  115 atctacacttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttcta------------- 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  8377543 atctacacttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatccctctctctct 8377444  T
Q  202 ---------tctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcc 291  Q
             ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377443 aaatttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcc 8377344  T
Q  292 cactaactcccttcctaaaagagtggcactatg 324  Q
    |||||||||||||||||||||||||||||||||    
T  8377343 cactaactcccttcctaaaagagtggcactatg 8377311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 7094158 - 7094490
Alignment:
Q  15 caagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacagctcttaagatttccaccaacagtctttactctatcga 114  Q
    ||||||| ||||||||||||||       |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  7094158 caagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaatagcagctcttaagatttccaccaacagtctttactctatcga 7094257  T
Q  115 atctacacttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttcta------------- 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                 
T  7094258 atctacacttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatccctctctctct 7094357  T
Q  202 ---------tctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcc 291  Q
             ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094358 aaatttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcc 7094457  T
Q  292 cactaactcccttcctaaaagagtggcactatg 324  Q
    |||||||||||||||||||||||||||||||||    
T  7094458 cactaactcccttcctaaaagagtggcactatg 7094490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 7097891 - 7098223
Alignment:
Q  15 caagtaagtacatatataaaatnnnnnnntggagcgccctttcccttgccttaacaacaacagctcttaagatttccaccaacagtctttactctatcga 114  Q
    ||||||| ||||||||||||||       |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  7097891 caagtaaatacatatataaaataaaaaaatggagcgccctttcccttaccttaacaatagcagctcttaagatttccaccaacagtctttactctatcga 7097990  T
Q  115 atctacacttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttcta------------- 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                 
T  7097991 atctacacttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatccctctctctct 7098090  T
Q  202 ---------tctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcc 291  Q
             ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098091 aaatttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcc 7098190  T
Q  292 cactaactcccttcctaaaagagtggcactatg 324  Q
    |||||||||||||||||||||||||||||||||    
T  7098191 cactaactcccttcctaaaagagtggcactatg 7098223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 197 - 324
Target Start/End: Complemental strand, 33886052 - 33885923
Alignment:
Q  197 ttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccact 295  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33886052 ttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccact 33885953  T
Q  296 aactcccttcct-aaaagagtggcactatg 324  Q
    |||||||||||| |||||||||||||||||    
T  33885952 aactcccttcctaaaaagagtggcactatg 33885923  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 33958200 - 33958329
Alignment:
Q  197 ttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccact 295  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  33958200 ttctctctattttcttcagagtgtagaatcagtaaagtggtgaatgaatggaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccact 33958299  T
Q  296 aactcccttcct-aaaagagtggcactatg 324  Q
    |||||||||||| |||||||||||||||||    
T  33958300 aactcccttcctaaaaagagtggcactatg 33958329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 22362628 - 22362538
Alignment:
Q  234 ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatg 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362628 ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatg 22362538  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 33886156 - 33886074
Alignment:
Q  121 acttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33886156 acttgtgatagatctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatc 33886074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 33958096 - 33958178
Alignment:
Q  121 acttgtgataggtctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactcactatgtttctatc 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33958096 acttgtgatagatctaaatgctagttttagagttgatctttgttctcatttctttctcctgcaagactctctatgtttctatc 33958178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 14097600 - 14097484
Alignment:
Q  212 tcaaagtgtagaatcagtaaag-ggtgaatgaatg----gaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc 306  Q
    ||||||||||||||||||| || ||||||||||||    |||||||  ||||||||||||||||||||| |||| |||| ||| || ||||||||||||     
T  14097600 tcaaagtgtagaatcagtagagtggtgaatgaatgaatagaataaatgaggtaaccgattgttattaatagtgagataaaccttcctctaactcccttct 14097501  T
Q  307 taaaagagtggcactat 323  Q
    || | ||||||| ||||    
T  14097500 tagatgagtggctctat 14097484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 41314476 - 41314593
Alignment:
Q  208 ttcttcaaagtgtagaatcagtaaagg--gtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc 305  Q
    ||||||||||||||||||||| ||| |  |||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  41314476 ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc 41314575  T
Q  306 ctaaaagagtggcactat 323  Q
    ||| | ||||||||||||    
T  41314576 ctagatgagtggcactat 41314593  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 11993047 - 11993173
Alignment:
Q  196 tttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccac 294  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||||||||| |||| |||| ||||||| |||||||||||||  |||||||||| ||||||    
T  11993047 tttctctctattttctttaaagtgtagaaccagtaaagtggtgaatgaaaggaacaaaggaggtaactgattgttattaataatgaaataacc-tcccac 11993145  T
Q  295 taactcccttcctaaaagagtggcacta 322  Q
    ||||||||||||||||||||||||||||    
T  11993146 taactcccttcctaaaagagtggcacta 11993173  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 2187003 - 2186887
Alignment:
Q  208 ttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc 306  Q
    ||||||||||||||||||||| |||| ||||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| |||||    
T  2187003 ttcttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcc 2186904  T
Q  307 taaaagagtggcactat 323  Q
    || | ||||||||||||    
T  2186903 tagatgagtggcactat 2186887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 19633140 - 19633254
Alignment:
Q  210 cttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttccta 308  Q
    ||||||||||||||||||| |||| ||||| | ||| ||| | |  ||||||| ||||||| ||| | || ||||||| ||||||||||||| |||||||    
T  19633140 cttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttgttattagttaaataactctcccactaactctcttccta 19633239  T
Q  309 aaagagtggcactat 323  Q
     | ||||||||||||    
T  19633240 gatgagtggcactat 19633254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 1609045 - 1609160
Alignment:
Q  208 ttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcc 306  Q
    ||||||||||||||||||||| |||| ||||| | ||| ||| | |  ||||||| ||||||| ||| || |||||||||  |||||||||||| |||||    
T  1609045 ttcttcaaagtgtagaatcagcaaagtggtgactaaatagaagagaagaggtaactgattgttgtta-ttatgaaataactatcccactaactctcttcc 1609143  T
Q  307 taaaagagtggcactat 323  Q
    || | ||||||||||||    
T  1609144 tagatgagtggcactat 1609160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 14276864 - 14276942
Alignment:
Q  195 gtttctatctattttcttcaaagtgtagaatcagtaaag-ggtgaatgaatggaataaagaaggtaaccgattgttattaat 275  Q
    |||||| || |||||||||||||||||   ||||||||| |||||||||||||||||||| ||||||||||||| |||||||    
T  14276864 gtttctctccattttcttcaaagtgta---tcagtaaagtggtgaatgaatggaataaaggaggtaaccgattgctattaat 14276942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 37627611 - 37627728
Alignment:
Q  208 ttcttcaaagtgtagaatcagtaaagg--gtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc 305  Q
    ||||||||||||||||||||| ||| |  |||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  37627611 ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc 37627710  T
Q  306 ctaaaagagtggcactat 323  Q
    ||| | ||||||||||||    
T  37627711 ctagatgagtggcactat 37627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 37806734 - 37806851
Alignment:
Q  208 ttcttcaaagtgtagaatcagtaaagg--gtgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttc 305  Q
    ||||||||||||||||||||| ||| |  |||| | ||| ||| | |  ||||||| ||||||||||| | |||||||||| ||||||||||||| ||||    
T  37806734 ttcttcaaagtgtagaatcagcaaaagtggtgactaaatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttc 37806833  T
Q  306 ctaaaagagtggcactat 323  Q
    ||| | ||||||||||||    
T  37806834 ctagatgagtggcactat 37806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 2963 - 2996
Alignment:
Q  291 ccactaactcccttcctaaaagagtggcactatg 324  Q
    |||||||||||||||||||||||||| |||||||    
T  2963 ccactaactcccttcctaaaagagtgacactatg 2996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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