View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_29 (Length: 341)
Name: NF9226_low_29
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 39093437 - 39093142
Alignment:
| Q |
17 |
ataaactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgataagattttcggagaaaagaaagaggaattc |
116 |
Q |
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| T |
39093437 |
ataaactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgatgagattttcggagaaaagaaagaggaattc |
39093338 |
T |
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| Q |
117 |
aatttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaatgaa |
216 |
Q |
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| T |
39093337 |
aatttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaatgaa |
39093238 |
T |
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| Q |
217 |
aatgaaggagggagtgaatatttannnnnnngagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatg |
312 |
Q |
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| T |
39093237 |
aatgaaggagggagtgaatatttatttttttgagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatg |
39093142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 39231885 - 39231835
Alignment:
| Q |
77 |
gcaacacgataagattttcggagaaaagaaagaggaattcaatttgagatg |
127 |
Q |
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| T |
39231885 |
gcaacaagatgagattttcggagaaaagaatgaggaattcaatttgagatg |
39231835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 39231838 - 39231795
Alignment:
| Q |
166 |
gatgtgaaaatgtttttactttttggagtgtgtttgagagggaa |
209 |
Q |
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| T |
39231838 |
gatgtgaaaatgtttttactttttcgaatgtgtttgagagggaa |
39231795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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