View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_31 (Length: 340)
Name: NF9226_low_31
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 28 - 318
Target Start/End: Original strand, 4286341 - 4286631
Alignment:
| Q |
28 |
tcacataaaagtagaggtctgttcaattttcactgggcataacagtaccatgttctacaagttcgatagaggtctcatctgcaagcaaatacataagtta |
127 |
Q |
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| T |
4286341 |
tcacataaacgtagaggtctgttcaattttcaccgggcataacagtaccatgttctactagttcgatagaggtctcatctgcaagcaaatacataagtta |
4286440 |
T |
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| Q |
128 |
caatcactcaccaccaagttattatattgaagattgaaccaaggacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaa |
227 |
Q |
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| T |
4286441 |
caatcactcaccaccaagttattatattgaagattgaaccaaagacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaa |
4286540 |
T |
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| Q |
228 |
caatgttcatgcattgctatataaaaggtctcaaaacataaaactggtttaataaacagcaacatttatttatgaccacctgtttgatcat |
318 |
Q |
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| T |
4286541 |
caatgttcatgcattgctatataaaaggtctcaaaacataaaactggtttaataaacagcaacatttatttatgaccacctgtttgatcat |
4286631 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 17165434 - 17165498
Alignment:
| Q |
176 |
aagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgca |
240 |
Q |
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| T |
17165434 |
aagattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgca |
17165498 |
T |
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