View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_40 (Length: 226)
Name: NF9226_low_40
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 54505205 - 54504983
Alignment:
| Q |
1 |
caaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcaccaccacctttactaccagatgaa |
100 |
Q |
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| T |
54505205 |
caaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatccatggccagcaccaccacctttactaccagatgaa |
54505106 |
T |
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| Q |
101 |
cttggggacggtgccggtgaaggtgactcgtctgaaggtgaagatgacggggccaatgaagctactgaatctgaaggtgacggtgccagtgatggtgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54505105 |
cttggggacggtgccggtgaaggtgactcgtctgaaggtgaagatgacggtgccaatgaagctactgaatctgaaggtgacggtgccagtgatggtgact |
54505006 |
T |
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| Q |
201 |
ctgagggtactgaaggcgactttgac |
226 |
Q |
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| T |
54505005 |
cggaggg---tgaaggcgactttgac |
54504983 |
T |
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