View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9226_low_8 (Length: 673)

Name: NF9226_low_8
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9226_low_8
NF9226_low_8
[»] chr5 (7 HSPs)
chr5 (311-654)||(14275945-14276293)
chr5 (433-642)||(37627055-37627262)
chr5 (516-599)||(37803601-37803684)
chr5 (311-506)||(37806299-37806496)
chr5 (326-464)||(33614491-33614635)
chr5 (216-245)||(37627457-37627486)
chr5 (216-245)||(37806567-37806596)
[»] chr4 (2 HSPs)
chr4 (311-654)||(11991764-11992113)
chr4 (173-215)||(637707-637749)
[»] chr7 (5 HSPs)
chr7 (311-654)||(2188002-2188349)
chr7 (311-654)||(19632556-19632902)
chr7 (433-654)||(1608465-1608685)
chr7 (140-213)||(2187812-2187884)
chr7 (216-245)||(2187905-2187934)
[»] chr1 (3 HSPs)
chr1 (313-654)||(41313585-41313931)
chr1 (137-213)||(41314051-41314126)
chr1 (125-169)||(10495134-10495178)
[»] chr2 (2 HSPs)
chr2 (328-654)||(19215664-19215995)
chr2 (384-651)||(19589466-19589736)
[»] chr8 (10 HSPs)
chr8 (311-654)||(29822775-29823121)
chr8 (438-654)||(451958-452171)
chr8 (470-654)||(7093793-7093976)
chr8 (470-654)||(7097526-7097709)
chr8 (311-403)||(453981-454077)
chr8 (311-403)||(7094022-7094117)
chr8 (311-403)||(7097755-7097850)
chr8 (216-245)||(29822677-29822706)
chr8 (216-245)||(45463068-45463097)
chr8 (139-215)||(29822583-29822658)
[»] scaffold0070 (1 HSPs)
scaffold0070 (324-654)||(58603-58925)
[»] chr3 (1 HSPs)
chr3 (349-654)||(8377726-8378031)
[»] scaffold0060 (1 HSPs)
scaffold0060 (614-654)||(16839-16879)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 311 - 654
Target Start/End: Complemental strand, 14276293 - 14275945
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattggttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatatttgtaagtc 410  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| | ||||||| || ||||||||||||||||||    
T  14276293 tgtaccatgcttacatactatgtgaacttgcttttgtattggctgtgagcataatttgttgttttcatatctgaattgcggacttgcatatttgtaagtc 14276194  T
Q  411 aaagttattgagg-tgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggt----cggatactcattgtgagcgatctattttgtggagt 505  Q
    | ||||||||  | |||||| ||||||||| ||||||| ||||||||||||||||||||||    ||||||||||||||| | |||||||||| ||||||    
T  14276193 agagttattgtcgatgtaatctgtgtctctggcaggtggttaagacaatgattaatttggttggtcggatactcattgtgtgtgatctattttttggagt 14276094  T
Q  506 taataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcg 605  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  14276093 taataatcatgtgtcgcatgcatacattcattgtcgcgtggtgcctataattggttgggacctgaagtcttgagtgcccataattggttggggcttatcg 14275994  T
Q  606 tttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14275993 tttcttggttgagtgctcataattggttgaggctcgttgttttcttttg 14275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 433 - 642
Target Start/End: Complemental strand, 37627262 - 37627055
Alignment:
Q  433 tgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacat 532  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| | ||||||| ||||||||||||   | |||||||||||||||||    
T  37627262 tgtctctagcaggtggttaagacaatgattaatttagtcgcatactcattgtgagtggtctattt-gtggagttaatatgcaggtgtcgcatgcatacat 37627164  T
Q  533 ttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggt 632  Q
    | |||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| |  |||||||||||||||||||    
T  37627163 tcattgtcgcttggtgcccataattggttgggatccgaagtcttgagtgcccataattggttgaggcttattgtttcct-tttgagtgctcataattggt 37627065  T
Q  633 tgaggctcgt 642  Q
    ||||||||||    
T  37627064 tgaggctcgt 37627055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 516 - 599
Target Start/End: Complemental strand, 37803684 - 37803601
Alignment:
Q  516 gtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggc 599  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  37803684 gtgtcgcatgcatacattcattgtcgtgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggc 37803601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 311 - 506
Target Start/End: Complemental strand, 37806496 - 37806299
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gt 405  Q
    |||| |||| |||||||||||||||||||| ||||||||||    ||||||||||||| |  || ||| ||||  || ||||||||||||||||||| ||    
T  37806496 tgtatcatgcttacatactatgtgaacttgattttgtattgctttgttgtgagtataacttgttattt-catgcctggattgaggtcttgcatattttgt 37806398  T
Q  406 aagtcaaagttattga-ggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggag 504  Q
     ||||   |||| ||  ||||||||   ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  37806397 tagtc---gttactgtcggtgtaatcaatgtctctagcaggtggttaagacaatgattaatttagtcggatactcattgtgagtggtctattttgtggag 37806301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 326 - 464
Target Start/End: Complemental strand, 33614635 - 33614491
Alignment:
Q  326 tactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcata-tttgtaagtcaaagttattg 420  Q
    |||||| |||||||| ||||||||||    |||||||||||||||  ||||||| |||  ||||||| ||||||||||| |||||||||| || ||||||    
T  33614635 tactatatgaacttgattttgtattgtttggttgtgagtataatttgttgtttttatgcgtgaattgtggtcttgcatattttgtaagtcgaaattattg 33614536  T
Q  421 -aggtgtaatttgtgtctctagcaggtgcttaagacaatgattaa 464  Q
      |||||||||||||||||| | | ||| ||||||||||||||||    
T  33614535 ttggtgtaatttgtgtctctcgtatgtggttaagacaatgattaa 33614491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 37627486 - 37627457
Alignment:
Q  216 tattgctaaggtaagggaaagggcgctcca 245  Q
    ||||||||||||||||||||||||||||||    
T  37627486 tattgctaaggtaagggaaagggcgctcca 37627457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 37806596 - 37806567
Alignment:
Q  216 tattgctaaggtaagggaaagggcgctcca 245  Q
    ||||||||||||||||||||||||||||||    
T  37806596 tattgctaaggtaagggaaagggcgctcca 37806567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 311 - 654
Target Start/End: Complemental strand, 11992113 - 11991764
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattggttg----tgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gt 405  Q
    |||||||||  ||||||||||| ||||||| |||||||||| |||    |||||||||||| |||||||||||| ||||||| |||||||||||||| ||    
T  11992113 tgtaccatgcatacatactatg-gaacttgattttgtattgcttggctgtgagtataattcgttgttttcatgtctgaattgcggtcttgcatattttgt 11992015  T
Q  406 aagtcaaagttattga-ggtgtaatttgtgtctctagcaggtgctt-aagacaatgattaatttggtcggatactcattgtgagcgatctattttgtgga 503  Q
    |||||  ||||||||  ||||||||  |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  11992014 aagtccgagttattgtcggtgtaatccgtgtctctagcaggtggtttaagacaatgattaatttggtcgaatactcattgtgagtgatctattttgtgga 11991915  T
Q  504 gttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttat 603  Q
    ||||||||  |||||||||| |||| |||| |||||||  ||||||| ||||||||||||||  | |||||||||||||||||||||||||| |||||||    
T  11991914 gttaataaccatgtgtcgcaagcatgcattcattgtcgcatggtgcccataattggttgggacccaaagtcttgagtgcccataattggttgaggcttat 11991815  T
Q  604 cgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  11991814 cgtttcttggttgagtgctcataattggttgaggctcgttgatttcatttg 11991764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 637707 - 637749
Alignment:
Q  173 atttgtgaaggtgaagattgggtggagcaaagaccacgagttg 215  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  637707 atttttgaaggtgaagatttggtggagcaaagaccacgagttg 637749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 2e-85; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 311 - 654
Target Start/End: Original strand, 2188002 - 2188349
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gt 405  Q
    |||| |||| |||||||||||||||||||| ||||||||||    ||||||||||||| |  |||||| ||||  || ||||||||||||||||||| ||    
T  2188002 tgtatcatgcttacatactatgtgaacttgattttgtattgattggttgtgagtataacttgttgttt-catgcttggattgaggtcttgcatattttgt 2188100  T
Q  406 aagtcaaagttattga-ggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggag 504  Q
     |||||  |||| ||  ||||||||   ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| | ||||||||||||||    
T  2188101 tagtcagcgttactgtcggtgtaatcaatgtctctagcaggtggttaagacaatgattaattaagtcggatactcattgtgagtggtctattttgtggag 2188200  T
Q  505 ttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatc 604  Q
    |||||||  | |||||||||||||||||| ||||||| |||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||     
T  2188201 ttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttgggacccgaagtcttgagtgcccataattggttggggcttatt 2188300  T
Q  605 gtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    ||||| |  |||||||||||||||||||||||||||||||| ||||||||    
T  2188301 gtttcct-tttgagtgctcataattggttgaggctcgttgtcttcttttg 2188349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 311 - 654
Target Start/End: Complemental strand, 19632902 - 19632556
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gt 405  Q
    |||| |||| |||||||||||||||||||| ||||||||||    ||||||||||||| |  |||||| ||||  || ||||||||||||||||||| ||    
T  19632902 tgtatcatgcttacatactatgtgaacttgattttgtattgcttcgttgtgagtataacttgttgttt-catgcttggattgaggtcttgcatattttgt 19632804  T
Q  406 aagtcaaagttattga-ggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggag 504  Q
     |||||| |||| ||  ||||||||   ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  19632803 tagtcaacgttactgtcggtgtaatcaatgtctctagcaggtggttaagacaatgattaatttagtcggatactcattgtgagtggtctattttgtggag 19632704  T
Q  505 ttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatc 604  Q
    |||||||  | |||||||||||||||||| | ||||| |||||||  ||||||||||||||  |||||||||||||| |||||||||||||||||||||     
T  19632703 ttaataagcaggtgtcgcatgcatacattcagtgtcgcgtggtgctcataattggttgggacccgaagtcttgagtg-ccataattggttggggcttatt 19632605  T
Q  605 gtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    ||||| |  |||||||||||||||||||||||||| ||||| ||||||||    
T  19632604 gtttcct-tttgagtgctcataattggttgaggcttgttgtcttcttttg 19632556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 433 - 654
Target Start/End: Complemental strand, 1608685 - 1608465
Alignment:
Q  433 tgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacat 532  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||  | |||||||||||||||||    
T  1608685 tgtctctagcaggtggttaagacaatgattaatttagtcggatactcattgtgagtggtctatcttgtggagttaataagcaggtgtcgcatgcatacat 1608586  T
Q  533 ttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggt 632  Q
    | || |||| |||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||    
T  1608585 tcatggtcgcgtggtgcccataattggttgggaccctaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggt 1608487  T
Q  633 tgaggctcgttgttttcttttg 654  Q
    |||||||| ||| |||||||||    
T  1608486 tgaggctctttgatttcttttg 1608465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 2187812 - 2187884
Alignment:
Q  140 aataggaattggaaactaagttagtaaatatttatttgtgaaggtgaagattgggtggagcaaagaccacgagt 213  Q
    ||||||| ||||||||| ||||||||| || || |||||||||||  |||||  ||||||||||||||| ||||    
T  2187812 aataggagttggaaactgagttagtaagtactt-tttgtgaaggtatagattcagtggagcaaagaccatgagt 2187884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 2187905 - 2187934
Alignment:
Q  216 tattgctaaggtaagggaaagggcgctcca 245  Q
    ||||||||||||||||||||||||||||||    
T  2187905 tattgctaaggtaagggaaagggcgctcca 2187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 6e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 313 - 654
Target Start/End: Complemental strand, 41313931 - 41313585
Alignment:
Q  313 taccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gtaa 407  Q
    ||||||| |||||||||||||||||||| ||||||||||    ||||||||||||| |  |||||| ||||  || ||||||||||||||||||| || |    
T  41313931 taccatgcttacatactatgtgaacttgattttgtattgcttggttgtgagtataacttgttgttt-catgcctggattgaggtcttgcatattttgtta 41313833  T
Q  408 gtcaaagttattga-ggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagtt 506  Q
    || |  |||| ||  ||||||||   ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  41313832 gttagcgttactgttggtgtaatcaatgtctctagcaggtggttaagacaatgattaatttagtcggatactcattgtgagtggtctattttgtggagtt 41313733  T
Q  507 aataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgt 606  Q
    |||||  | |||||||||||||||||| ||||||| |||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||    
T  41313732 aataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgt 41313633  T
Q  607 ttcttcgttgagtgctcataattggttgaggctcgttgt-tttcttttg 654  Q
    ||| |  |||||||||||||||||||||||||||||||| |||||||||    
T  41313632 ttcct-tttgagtgctcataattggttgaggctcgttgtctttcttttg 41313585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 41314126 - 41314051
Alignment:
Q  137 agtaataggaattggaaactaagttagtaaatatttatttgtgaaggtgaagattgggtggagcaaagaccacgagt 213  Q
    |||||||||| ||||||||| ||||||||| || || |||||||||||| |||||  ||||||||||||||| ||||    
T  41314126 agtaataggagttggaaactgagttagtaagtactt-tttgtgaaggtgtagattccgtggagcaaagaccatgagt 41314051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 10495178 - 10495134
Alignment:
Q  125 gtaggaatcaagagtaataggaattggaaactaagttagtaaata 169  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||    
T  10495178 gtaggaattaggagtaataggaattggaaattgagttagtaaata 10495134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 9e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 328 - 654
Target Start/End: Original strand, 19215664 - 19215995
Alignment:
Q  328 ctatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gtaagtcaaagttattga- 421  Q
    ||||||||||||| ||||||||||    ||||||||||||| |  |||||||||||| ||||||| |||||||||||||| |||||||    ||| |       
T  19215664 ctatgtgaacttgattttgtattgcttggttgtgagtataacttgttgttttcatgtctgaattgtggtcttgcatattttgtaagtcggtattactatc 19215763  T
Q  422 ggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcg 521  Q
    ||||||||  |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |  ||||||||||||||||||||  | |||| |    
T  19215764 ggtgtaatcagtgtctctagcaggtggttaagataatgattaatttagtcggatactcattgtgagtggcctattttgtggagttaataagcaggtgttg 19215863  T
Q  522 catgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgc 621  Q
    |||||||||||| |||||||  ||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |  ||||||||    
T  19215864 catgcatacattcattgtcgcatggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgc 19215962  T
Q  622 tcataattggttgaggctcgttgttttcttttg 654  Q
    |||||||||||| ||||||||||| ||||||||    
T  19215963 tcataattggtttaggctcgttgtcttcttttg 19215995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 384 - 651
Target Start/End: Original strand, 19589466 - 19589736
Alignment:
Q  384 aattgaggtcttgcatattt-gtaagtcaaagttattgagg-tgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcat 481  Q
    ||||| |||||||||||||| ||| ||| || ||||||  | |||||| |||||||||||  |||| |||  ||||  |||||||| || |||||||||     
T  19589466 aattgtggtcttgcatattttgtatgtcgaaattattgttgatgtaatctgtgtctctagatggtggttagaacaaccattaatttagttggatactcag 19589565  T
Q  482 tgtgagcgatctattttg-tggagttaat-aattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgag 579  Q
    ||| |  ||||||||||  |||||||||| ||  |||| |  |||||||| ||| || |||||||| |||| |||||||||||| |  | ||||||||||    
T  19589566 tgtaattgatctatttttatggagttaattaaccatgtattacatgcatatattcatcgtcgtgtgctgcccataattggttggaaccctaagtcttgag 19589665  T
Q  580 tgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttctt 651  Q
    ||||| ||||||||||||| || |||||| |   ||||||| ||||||||||||||| ||||||||||||||    
T  19589666 tgcccgtaattggttggggtttgtcgttt-tgttttgagtgttcataattggttgagactcgttgttttctt 19589736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 311 - 654
Target Start/End: Original strand, 29822775 - 29823121
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gt 405  Q
    |||| |||| |||||||||||||||||||| ||||||||||    ||||||||||| | |  |||||| ||||  || |||| |||||||||||||| ||    
T  29822775 tgtatcatgcttacatactatgtgaacttgattttgtattgcttggttgtgagtatgacttgttgttt-catgcttggattgtggtcttgcatattttgt 29822873  T
Q  406 aagtcaaagttattga-ggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggag 504  Q
     ||||  ||||| ||  ||||||||   ||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||| | ||||||||||||||    
T  29822874 tagtcggagttactgtcggtgtaatcaatgtctctagcaggtggttaagaccatgattaatttagtcagatactcattgtgagtggtctattttgtggag 29822973  T
Q  505 ttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatc 604  Q
    | |||||  | |||||||||||||||||| ||||||| |||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||     
T  29822974 t-aataagcaggtgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacccgaagtcttgagcgcccataattggttggggcttatt 29823072  T
Q  605 gtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    ||||| |  |||||||||||||||||||||||||||||||| ||||||||    
T  29823073 gtttcct-tttgagtgctcataattggttgaggctcgttgtcttcttttg 29823121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 438 - 654
Target Start/End: Complemental strand, 452171 - 451958
Alignment:
Q  438 ctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttatt 537  Q
    |||||||||| ||||||  ||||||||||| ||||| ||||||||  ||||| | | |||||||||||||||||| | ||||| |||||||||||| |||    
T  452171 ctagcaggtggttaaga--atgattaatttagtcggttactcattaagagcggtgttttttgtggagttaataatcaggtgtcacatgcatacattcatt 452074  T
Q  538 gtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgagg 637  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||| |     
T  452073 gtcgtgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttcct-tttgagtgctcataattggttggga 451975  T
Q  638 ctcgttgttttcttttg 654  Q
    ||||||| |||||||||    
T  451974 ctcgttgatttcttttg 451958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 470 - 654
Target Start/End: Complemental strand, 7093976 - 7093793
Alignment:
Q  470 tcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcg 569  Q
    ||||||| ||||||||||   ||||||| ||||||||||||   | |||||||||||||||||| ||||| | |||||||| |||||||||| |||  ||    
T  7093976 tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacccg 7093877  T
Q  570 aagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||| |||||||||    
T  7093876 aagtcttgagtgcccataattggttggggcttattgtttccttg-tgagtgctcataattggttgaggctcgttgatttcttttg 7093793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 470 - 654
Target Start/End: Complemental strand, 7097709 - 7097526
Alignment:
Q  470 tcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcg 569  Q
    ||||||| ||||||||||   ||||||| ||||||||||||   | |||||||||||||||||| ||||| | |||||||| |||||||||| |||  ||    
T  7097709 tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacccg 7097610  T
Q  570 aagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||| |||||||||    
T  7097609 aagtcttgagtgcccataattggttggggcttattgtttccttg-tgagtgctcataattggttgaggctcgttgatttcttttg 7097526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 454077 - 453981
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt 403  Q
    |||||| || || ||||||||||||||||||||||||||||    ||||||| ||||| |  |||||||||||||||||||| ||||||||||||||    
T  454077 tgtaccctgctttcatactatgtgaacttgcttttgtattgcttggttgtgaatataacttgttgttttcatgtatgaattgtggtcttgcatattt 453981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 7094117 - 7094022
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt 403  Q
    |||| |||| |||||||||| ||||||||| ||||||||||    ||||||||||||| |  |||||| ||||  || |||||||||||||||||||    
T  7094117 tgtatcatgcttacatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgttt-catgcctggattgaggtcttgcatattt 7094022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 403
Target Start/End: Complemental strand, 7097850 - 7097755
Alignment:
Q  311 tgtaccatgtttacatactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt 403  Q
    |||| |||| |||||||||| ||||||||| ||||||||||    ||||||||||||| |  |||||| ||||  || |||||||||||||||||||    
T  7097850 tgtatcatgcttacatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttgttt-catgcctggattgaggtcttgcatattt 7097755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 29822677 - 29822706
Alignment:
Q  216 tattgctaaggtaagggaaagggcgctcca 245  Q
    ||||||||||||||||||||||||||||||    
T  29822677 tattgctaaggtaagggaaagggcgctcca 29822706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 45463097 - 45463068
Alignment:
Q  216 tattgctaaggtaagggaaagggcgctcca 245  Q
    ||||||||||||||||||||||||||||||    
T  45463097 tattgctaaggtaagggaaagggcgctcca 45463068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 29822583 - 29822658
Alignment:
Q  139 taataggaattggaaactaagttagtaaatatttatttgtgaaggtgaagattgggtggagcaaagaccacgagttg 215  Q
    |||||||||||  ||||| |||||||||||| || ||| ||||||||  ||||  |||||||||| |||||||||||    
T  29822583 taataggaattcaaaactgagttagtaaatactt-tttatgaaggtgtggattcagtggagcaaataccacgagttg 29822658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 324 - 654
Target Start/End: Complemental strand, 58925 - 58603
Alignment:
Q  324 catactatgtgaacttgcttttgtattg----gttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gtaagtcaaagttat 418  Q
    |||| |||||||||||||||||||||||    ||||||| ||||| |  ||||||||||| |||||||| |||||||||||||| |||||||            
T  58925 catattatgtgaacttgcttttgtattgcttggttgtgaatataacttgttgttttcatgcatgaattgtggtcttgcatattttgtaagtc-------- 58834  T
Q  419 tgaggtgtaatttgtgtctctagcaggtgcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagttaataattatgtg 518  Q
       |||| ||| ||||||||||||||||| ||||||  ||||||||||| ||||| |||||||| |||| | | | ||||||||| |||||||  |  ||    
T  58833 ---ggtgcaatctgtgtctctagcaggtggttaaga--atgattaatttagtcggttactcattatgagaggtgttttttgtggaattaataaccagctg 58739  T
Q  519 tcgcatgcatacatttattgtcgtgtggtgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgag 618  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| |  |||||    
T  58738 tcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttcctttttgag 58639  T
Q  619 tgctcataattggttgaggctcgttgttttcttttg 654  Q
    ||||||||||||||||||||||||||| ||||||||    
T  58638 tgctcataattggttgaggctcgttgtcttcttttg 58603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 349 - 654
Target Start/End: Original strand, 8377726 - 8378031
Alignment:
Q  349 ttggttgtgagtataattcattgttttcatgtatgaattgaggtcttgcatattt-gtaagtcaaagttattga-ggtgtaatttgtgtctctagcaggt 446  Q
    |||||||||||||||| |  |||||| ||||  || ||||||||||||||||||| || |||||  |||| ||  ||||||||   ||||||||||||||    
T  8377726 ttggttgtgagtataaattgttgttt-catgcctggattgaggtcttgcatattttgttagtcagcgttactgtcggtgtaatcaatgtctctagcaggt 8377824  T
Q  447 gcttaagacaatgattaatttggtcggatactcattgtgagcgatctattttgtggagttaataattatgtgtcgcatgcatacatttattgtcgtgtgg 546  Q
    | |||||||| |||||||||| |||||||| ||||||||||   ||||||||||||||||||||   | |||||||||||||||||| ||||| | ||||    
T  8377825 ggttaagacagtgattaatttagtcggatattcattgtgagttgtctattttgtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtgg 8377924  T
Q  547 tgcctataattggttgggattcgaagtcttgagtgcccataattggttggggcttatcgtttcttcgttgagtgctcataattggttgaggctcgttgtt 646  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||| ||||| |    
T  8377925 tgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttg-tgagtgctcataattggttgaggcccgttgat 8378023  T
Q  647 ttcttttg 654  Q
    ||||||||    
T  8378024 ttcttttg 8378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 654
Target Start/End: Original strand, 16839 - 16879
Alignment:
Q  614 ttgagtgctcataattggttgaggctcgttgttttcttttg 654  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  16839 ttgagtgctcataattggttgaggttcgttgatttcttttg 16879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University