View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9226_low_9 (Length: 565)
Name: NF9226_low_9
Description: NF9226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9226_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Original strand, 17110704 - 17111250
Alignment:
| Q |
19 |
ctgttatgcatactgaagtgtgtagttacctggctaattggtgacatatgctattttaaactttaagcaaatagatagaacactttgtacaactttatta |
118 |
Q |
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| T |
17110704 |
ctgttatgcatactgaagtgtgtagttacctggctaattggtgacatatgctattttaaactttaagcaaatagatagaacactttgtacaactttatta |
17110803 |
T |
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| Q |
119 |
gatgacgtgatttgtttcttgagtttcttaaagaacattgagttttatagcagaattaatttcttgttcaaatctgtcacaataaactattaatttccgc |
218 |
Q |
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| T |
17110804 |
gatgacgtgatttgttttttgagtttctaaaagaacattgagttttatagcagaattaatttcttgttcaaatctgtcacaataaactattaatttccgc |
17110903 |
T |
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| Q |
219 |
ctcatgctgtcaactgtgtgtattattctcttcatgatgtgattatttcagaattagaaggcatgcataagctatttcatattgattgatgaatgctcca |
318 |
Q |
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| T |
17110904 |
ctcatgctgtcaactgtgtgtattattctcttcatgatgtgattatttcagaattaaaaggcatgcataagctatttcatattgattgatgaatgctcca |
17111003 |
T |
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| Q |
319 |
tttgattttttcgcaatacaggttagaaggaaatccagtgagactttggtttgcttaaacattacaggaagaactttttgcttattcaagtgttggtttt |
418 |
Q |
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| T |
17111004 |
tttgattttttcgcaatacaggttagaaggaaatccagtgagagtttggtttgcttaaacattacaggaagaactttttgcttattcaagtgttggtttt |
17111103 |
T |
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| Q |
419 |
tggttctgattccagtgttggattcatattgtgtgtcatgtaccgagaaattatttgatgagaatatttgcaactcttagagatacataaccactattac |
518 |
Q |
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| T |
17111104 |
tggttctgattcaagtgttggtttcatattgtgtgtcatgtactgagaaattatttgatgagaatatttgcaactcttagagatacataaccactattac |
17111203 |
T |
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| Q |
519 |
tttgacttgcatatttttgattttgggttatgtatgatcagtatttt |
565 |
Q |
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| T |
17111204 |
tttgacttgcatattttggattttgggtcatgtatgatcagtatttt |
17111250 |
T |
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