View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9227_high_1 (Length: 426)
Name: NF9227_high_1
Description: NF9227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9227_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 2667608 - 2667851
Alignment:
| Q |
19 |
ctccagagaggagttcgttggatttggcacctaaatcggaataatttaggtttcatatgttgacgactttgataatgtattccattgattacttcattca |
118 |
Q |
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| T |
2667608 |
ctccatagaggagttcgttggatttggcacctaaatcggaacaatttaggtttcatatgttgacgactttgataatgtattccattgattacttcattca |
2667707 |
T |
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| Q |
119 |
aagccctatgttaaacaaaaaagagataaataaataaggagtttttatgttactctgtttcaaaacactatataaaagaccactaga-agnnnnnnngaa |
217 |
Q |
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| T |
2667708 |
aagccctatgttaaataaaaaagag--aaataaataagtaggttttatgttactctgtttcaaaacactatataaaagattactacatagaaaaaaagag |
2667805 |
T |
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| Q |
218 |
gactgatatttgtacaattaattttagacaactttgatcacaacca |
263 |
Q |
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| T |
2667806 |
gagtgatatttgtacaattagttttagataattttgatgacaacca |
2667851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 407
Target Start/End: Original strand, 2667960 - 2668034
Alignment:
| Q |
333 |
actatttaaatttggtaacattctaaaaatgttaggtaaaacctttctttttatcattaagaagtcaagttgata |
407 |
Q |
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| T |
2667960 |
actatttgaatttggtaacattctaaaaatgttaggtaaaacctctctttttgtctttaagaaatcaagttgata |
2668034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 2678208 - 2678287
Alignment:
| Q |
98 |
ttccattgattacttcattcaaagccctatgttaaacaaaaa-agagataaataaataaggagtttttatgttactctgt |
176 |
Q |
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| T |
2678208 |
ttccattgattacttcattcaaaaccctaggctaaataaaaatagtgataaataaaaaaggtgattctatgttactctgt |
2678287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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