View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9227_high_3 (Length: 254)
Name: NF9227_high_3
Description: NF9227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9227_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 15039799 - 15039656
Alignment:
| Q |
14 |
attattctattggtaaagtttcataactttttctattctcttctatttgtgttgtgtaactgttatgttttaacattatattaacaaaccatacgtagat |
113 |
Q |
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| T |
15039799 |
attattctattggtaaagtttcataactttttctattctcttctatttgtgttgtgtaactgttatgttttaacattatattaacaaactatacgtagat |
15039700 |
T |
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| Q |
114 |
ttgaacacttgtaaact-aagattaatcaactattttaaccatt |
156 |
Q |
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| T |
15039699 |
ttgaacacttgtaaactaaagattaatcaactattttaaccatt |
15039656 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 15039634 - 15039564
Alignment:
| Q |
184 |
tgctaacgtgtgtaaaacatgaac--gtattcttcttnnnnnnncattaacaatattttatactaaatttt |
252 |
Q |
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| T |
15039634 |
tgctaacgtgtgtaaaacatgaactcgtattcttcttaaaaaaacattaacaatattttatactaaatttt |
15039564 |
T |
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