View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9227_low_3 (Length: 393)
Name: NF9227_low_3
Description: NF9227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9227_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 2441803 - 2441429
Alignment:
| Q |
17 |
aggatactaccaaaagtaaactcctgaatgtttttccaacaattggtactagatgtatgaaccttcacttctgtcttgcatgcaatgttaccactactat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2441803 |
aggatactaccaaaagtaaactcctgaatgtttttccaacaattggtaatagatgtatgaaccttcacttctgtcttgcatgcaatattaccactactat |
2441704 |
T |
|
| Q |
117 |
cttgtacaagaccttgcaaaacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaatgccatgtgagtgaaactccaatttggctt |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2441703 |
cttgtataagaccttgcaaaacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaacgccatgtgagtgaaactccaatttggctt |
2441604 |
T |
|
| Q |
217 |
ttgaaataggggaaactccttaatttttctaatggaagggttccataatatgacagactttttataaataccagcagtaaaacaaagtatgccattgcag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441603 |
ttgaaataggggaaactccttaatttttctaatggaagggttccataatatgacagagattttataaataccagcagtaaaacaaagtatgccattgcag |
2441504 |
T |
|
| Q |
317 |
gagccaacgaagcaatctacacataacctaggatgatctccatgaatattatacggagaatactcatactctgtg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2441503 |
gagccaacgaagcaatctacacataacctaggatgatctccatgaatattatacggagaatactcatactctgtg |
2441429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 3754269 - 3754219
Alignment:
| Q |
136 |
aacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaa |
186 |
Q |
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|||||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
3754269 |
aacaacaaccaccttgtaattatcgtttaaagaatcatagccaaagccaaa |
3754219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 4142519 - 4142569
Alignment:
| Q |
136 |
aacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaa |
186 |
Q |
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|
|||||||||||| ||||||||||| || |||||||||||||||||||||| |
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|
| T |
4142519 |
aacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaa |
4142569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 4158329 - 4158379
Alignment:
| Q |
136 |
aacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaa |
186 |
Q |
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|||||||||||| ||||||||||| || |||||||||||||||||||||| |
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|
| T |
4158329 |
aacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaa |
4158379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 12132754 - 12132708
Alignment:
| Q |
139 |
aacaaccactttgtaattatcattaaaagaatcatagccaaagccaa |
185 |
Q |
| |
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||||||||| |||||||||||| || ||||||||||||||||||||| |
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|
| T |
12132754 |
aacaaccaccttgtaattatcagtacaagaatcatagccaaagccaa |
12132708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 7432431 - 7432483
Alignment:
| Q |
134 |
aaaacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaa |
186 |
Q |
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||||||| || ||| |||||||||||| |||| |||||||||||||| ||||| |
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|
| T |
7432431 |
aaaacaataatcaccttgtaattatcactaaatgaatcatagccaaaaccaaa |
7432483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 2067388 - 2067505
Alignment:
| Q |
69 |
atgtatgaaccttcacttctgtcttgc--atgcaatgttaccactactatcttgtacaagaccttgcaaaacaacaaccactttgtaattatcattaaaa |
166 |
Q |
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|||||||||||||||||||| ||||| ||| ||| ||||| |||||||||||| || | ||||| |||||||||| |||||| |||| ||||| |
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| T |
2067388 |
atgtatgaaccttcacttctatcttgtgaatgtaat--taccattactatcttgtatttgatatcgcaaaccaacaaccaccttgtaagtatctctaaaa |
2067485 |
T |
|
| Q |
167 |
gaatcatagccaaagccaaa |
186 |
Q |
| |
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|||||||||||||| ||||| |
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|
| T |
2067486 |
gaatcatagccaaaaccaaa |
2067505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 1078566 - 1078615
Alignment:
| Q |
136 |
aacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaa |
185 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| ||||||||||||| |
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|
| T |
1078566 |
aacaacaaccaccttgtaattctcggtaaaagaatcgtagccaaagccaa |
1078615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 20020148 - 20020201
Alignment:
| Q |
133 |
caaaacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaa |
186 |
Q |
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|
||||||||||||||| |||||||| || | |||||||||||||||||||||| |
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|
| T |
20020148 |
caaaacaacaaccaccttgtaattgtccgttgaagaatcatagccaaagccaaa |
20020201 |
T |
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