View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9228_high_1 (Length: 803)

Name: NF9228_high_1
Description: NF9228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9228_high_1
NF9228_high_1
[»] scaffold0140 (1 HSPs)
scaffold0140 (178-803)||(35836-36461)
[»] chr1 (6 HSPs)
chr1 (213-791)||(23573177-23573754)
chr1 (464-525)||(31815134-31815195)
chr1 (273-372)||(31815281-31815380)
chr1 (567-722)||(31814943-31815098)
chr1 (229-334)||(7384449-7384554)
chr1 (229-331)||(9419362-9419464)
[»] chr4 (5 HSPs)
chr4 (178-710)||(13507638-13508170)
chr4 (178-710)||(13507080-13507611)
chr4 (271-360)||(28427317-28427406)
chr4 (231-333)||(42225735-42225837)
chr4 (460-523)||(28427505-28427568)
[»] chr6 (7 HSPs)
chr6 (567-723)||(7799387-7799543)
chr6 (567-723)||(19398488-19398644)
chr6 (271-426)||(1134522-1134676)
chr6 (273-372)||(7799724-7799823)
chr6 (273-372)||(19597477-19597576)
chr6 (273-370)||(19401637-19401734)
chr6 (315-372)||(19581083-19581140)
[»] chr7 (3 HSPs)
chr7 (231-397)||(28557055-28557221)
chr7 (237-397)||(707652-707812)
chr7 (273-372)||(41385307-41385406)
[»] chr2 (4 HSPs)
chr2 (229-358)||(31559072-31559201)
chr2 (464-722)||(22059336-22059588)
chr2 (273-372)||(22059674-22059773)
chr2 (273-372)||(42827777-42827876)
[»] chr3 (6 HSPs)
chr3 (271-360)||(5386744-5386833)
chr3 (461-596)||(51253126-51253252)
chr3 (271-359)||(5386034-5386122)
chr3 (464-523)||(5386219-5386278)
chr3 (465-524)||(5496660-5496719)
chr3 (322-372)||(31200070-31200120)
[»] scaffold0129 (2 HSPs)
scaffold0129 (464-723)||(3429-3682)
scaffold0129 (273-372)||(3768-3867)
[»] chr8 (1 HSPs)
chr8 (302-397)||(36900336-36900431)


Alignment Details
Target: scaffold0140 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 178 - 803
Target Start/End: Original strand, 35836 - 36461
Alignment:
Q  178 atctctcacccactaccttcttcatctttc-tgccaaatttttcatctcacccaatgtcctctcattccattaccaattcatcttcaattgaaatgccta 276  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35836 atctctcacccactaccttcttcatctttcttgccaaa-ttttcatctcatccaatgtcttctcattccattaccaattcatcttcaattgaaatgccta 35934  T
Q  277 tttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattt 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35935 tttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattt 36034  T
Q  377 tgtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaatatgtgtatggatgattttgtttttagggtcctaatagttgcaagttg 476  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  36035 tgtataatactttgtttgttgggtattttggcacactttaatgtaattaaaagatgtgtatggttgattttgtttttagggtcctaatagttgcaagttg 36134  T
Q  477 ttcatatgggatgatgaaattgatgtacatcctccatatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaatgtcacaaagcttccat 576  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  36135 ttcatatgggatgatgaaattgatggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccat 36234  T
Q  577 gtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagctccaatactc 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36235 gtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactc 36334  T
Q  677 aagaaagaaggcaaatttgtttatggttttgttggttgtatcttgggcaatgttcatttcatatctgaagatgtagtgtaatgactcggttcaaatgtta 776  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36335 aagaaagaaggcaaatttgtttatggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgactcggttcaaatgtta 36434  T
Q  777 aatcaatgttatgaagtttatgacatt 803  Q
    |||||||||||||||||||||||||||    
T  36435 aatcaatgttatgaagtttatgacatt 36461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 213 - 791
Target Start/End: Original strand, 23573177 - 23573754
Alignment:
Q  213 aatttttcatctcacccaatgtcctctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatct 312  Q
    |||||||||| ||||||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23573177 aatttttcatatcacccaatgtctactcattccatgaccaattcatcttcaactgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatct 23573276  T
Q  313 caaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttgggtattttcgcacac 412  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |    
T  23573277 caaattcaactgagaatcctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgattgttgggtaatttcgcaccc 23573376  T
Q  413 tttaatgtaattaaaatatgtgtatggatgattttgttttt-agggtcctaatagttgcaagttgttcatatgggatgatgaaattgatgtacatcctcc 511  Q
    ||||||||||   ||| ||||| |||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  23573377 tttaatgtaaaataaaaatgtggatggtttattttgttttttagggttctaatagttgcaagttgttcatatgggatgatgaaattgatggacatcctgc 23573476  T
Q  512 atatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagagatgttgaaagacatt 611  Q
    ||||||||||||||||| |||||||||||||||||||||| | ||| |||| ||||| |||| |||||||||||||||||||||| || |||||||||||    
T  23573477 atatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagctgctgaaagacatt 23573576  T
Q  612 actggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttgg 711  Q
    ||||||||||| || ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||   ||||    
T  23573577 actggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtttatgtttacattgg 23573676  T
Q  712 ttgtatcttgggcaatgttcatttcatatctgaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaa 791  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| ||  |||||||||||||||||||||||||||||||    
T  23573677 ttgtatcttgggcaatgttcattacatatctgacgatgtagtgtgat--ctcggttcaaatgttaaatcaatgttatgaa 23573754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 31815195 - 31815134
Alignment:
Q  464 tagttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtccag 525  Q
    |||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  31815195 tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgtccag 31815134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 31815380 - 31815281
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||| ||||||    
T  31815380 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtt 31815281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 722
Target Start/End: Complemental strand, 31815098 - 31814943
Alignment:
Q  567 aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagc 666  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||  |||| ||  | |||   || ||||| |||||||| ||||||||||    
T  31815098 aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc 31814999  T
Q  667 tccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgg 722  Q
    | ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||    
T  31814998 tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg 31814943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 7384554 - 7384449
Alignment:
Q  229 caatgtcctctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 328  Q
    ||||||| ||||||| |||| | |||||||||||||||||  ||||||| ||||  ||||||||||  |||| |||||| ||||| ||||||| | | ||    
T  7384554 caatgtcttctcatttcattgctaattcatcttcaattgagttgcctatatgtgcgtgcaacaaaattatgaggatgttcatctccaattcaaataaaaa 7384455  T
Q  329 ccctaa 334  Q
    ||||||    
T  7384454 ccctaa 7384449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 9419464 - 9419362
Alignment:
Q  229 caatgtcctctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 328  Q
    ||||||| |||||||||||| |  | ||||| ||||||||  | |||||   ||||| |||||||| |||||||||||| ||||| ||||||  ||||||    
T  9419464 caatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctccaattcacatgacaa 9419365  T
Q  329 ccc 331  Q
    |||    
T  9419364 ccc 9419362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 178 - 710
Target Start/End: Complemental strand, 13508170 - 13507638
Alignment:
Q  178 atctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcctctcattccattaccaattcatcttcaattgaaatgcctat 277  Q
    |||||||||||| | ||||||||||||||||| ||| || ||||||||||||| |||| |||||||||||||| ||||||| ||||||| |  |||||||    
T  13508170 atctctcacccaattccttcttcatctttctgtcaatttcttcatctcacccagtgtcttctcattccattactaattcatattcaattaagttgcctat 13508071  T
Q  278 ttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttatttt 377  Q
     ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  13508070 atgtggttgcaacaaagcaatgaagatgtttatccccaattcaattgacaaccctaaaatgagataatggaaatgcccaacatttatggtgagttatttt 13507971  T
Q  378 gtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaatatgtgtatggatgattttgtttttagggtcctaatagttgcaagttgt 477  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||||||| | ||||| |||||||||||||||||| |||||||||| |||||||    
T  13507970 gtataatactttgtttgttgtgtattttcgcacagtttaatataattaaaatatatatatggttgattttgtttttagggtgctaatagttgtaagttgt 13507871  T
Q  478 tcatatgggatgatgaaattgatgtacatcctccatatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaatgtcacaaagcttccatg 577  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||  |||||||||| |||||||||||||| || ||||||||||||||||||    
T  13507870 tcatatgggatgatgaaattgatggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatg 13507771  T
Q  578 tgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagctccaatactca 677  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| || | |||||||| |||||| |||||||||||||||||||||||    
T  13507770 tgattgcaattgtgaagagatgccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactca 13507671  T
Q  678 agaaagaaggcaaatttgtttatggttttgttg 710  Q
    || ||||||||||||||||||||| ||||||||    
T  13507670 aggaagaaggcaaatttgtttatgattttgttg 13507638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 178 - 710
Target Start/End: Original strand, 13507080 - 13507611
Alignment:
Q  178 atctctcacccactaccttcttcatctttctgccaaatttttcatctcacccaatgtcctctcattccattaccaattcatcttcaattgaaatgcctat 277  Q
    |||| ||||||| | |||||||||||||||  |||| || |||||||| ||||||||| ||| |||||||||| |||||||||||||||||  |||||||    
T  13507080 atctgtcacccaattccttcttcatctttcaaccaatttcttcatctctcccaatgtcttcttattccattactaattcatcttcaattgag-tgcctat 13507178  T
Q  278 ttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttatttt 377  Q
    |||||||||||||||| ||||||| ||||||||||| |||| | |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  13507179 ttgtggttgcaacaaagcaatgaatatgtttatctccaatttagttgacaaccctaaaagaagatactggaaatacccaacatttatggcgagttatttt 13507278  T
Q  378 gtataatactttgtttgttgggtattttcgcacactttaatgtaattaaaatatgtgtatggatgattttgtttttagggtcctaatagttgcaagttgt 477  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||| |||||||||| ||||||| |||||||||| |||||||    
T  13507279 gtataatactttgtttgttgtgtattttcgcacagtttaatgtaattaaaaaatgtatatggttgattttgttattagggtgctaatagttgtaagttgt 13507378  T
Q  478 tcatatgggatgatgaaattgatgtacatcctccatatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaatgtcacaaagcttccatg 577  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| || ||  ||||||| ||||||||||||||||||||  ||||||||||||||| |    
T  13507379 tcatatgggatgatgaaattgatggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacg 13507478  T
Q  578 tgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagctccaatactca 677  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||||| |||  | |||||||||| ||||||||||||||||||||| ||||||||    
T  13507479 tgattgcaattgtgaagagatgctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactca 13507578  T
Q  678 agaaagaaggcaaatttgtttatggttttgttg 710  Q
    || ||||| ||||||||||||||||||||||||    
T  13507579 aggaagaatgcaaatttgtttatggttttgttg 13507611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 271 - 360
Target Start/End: Original strand, 28427317 - 28427406
Alignment:
Q  271 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat 360  Q
    ||||| |||||||||||||||||||   || |||||| || || ||||||||||| |||||||||| |||||| ||||||||||||||||    
T  28427317 tgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaattgaaaaccctaaaaagagatattggaaatgcccaacat 28427406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 42225735 - 42225837
Alignment:
Q  231 atgtcctctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc 330  Q
    ||||| |||||||||||| | |||| |||||||||| || ||| ||| ||||||||||||||||  |||| |||||| ||||| ||||||| ||| ||||    
T  42225735 atgtcttctcattccattgctaattgatcttcaatttaattgcttatatgtggttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacc 42225834  T
Q  331 cta 333  Q
    |||    
T  42225835 cta 42225837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 460 - 523
Target Start/End: Original strand, 28427505 - 28427568
Alignment:
Q  460 ctaatagttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtcc 523  Q
    |||||||||| ||||||| |||||| |||||||||||||| | |||||| |||||||| |||||    
T  28427505 ctaatagttgtaagttgtacatatgtgatgatgaaattgaaggacatcccccatatgtccgtcc 28427568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 567 - 723
Target Start/End: Complemental strand, 7799543 - 7799387
Alignment:
Q  567 aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagc 666  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||| |||| || || ||| |||| |||||||||||||| ||||||||||    
T  7799543 aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc 7799444  T
Q  667 tccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg 723  Q
    | ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||||    
T  7799443 tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg 7799387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 567 - 723
Target Start/End: Complemental strand, 19398644 - 19398488
Alignment:
Q  567 aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaagaagc 666  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||| |||| || || ||| |||| ||||||||||| || ||||||||||    
T  19398644 aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc 19398545  T
Q  667 tccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg 723  Q
    | ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||||    
T  19398544 tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg 19398488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 426
Target Start/End: Original strand, 1134522 - 1134676
Alignment:
Q  271 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag 370  Q
    ||||||| ||||||||||| ||||  |||| |||||| ||||| ||||||  |||||||| ||||| |||||| |||||||||||||| ||||||||||     
T  1134522 tgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattcacatgacaacc-taaaaagagatattggaaatgcccaacctttatggtgaa 1134620  T
Q  371 ttattttgtataatactttgtttgttgggtattttcgcacactttaatgtaattaa 426  Q
    |   ||  ||||||| ||||||| |||  ||||||| |||| ||||||||||||||    
T  1134621 tgtgttgttataatagtttgttttttgtttattttcccacattttaatgtaattaa 1134676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 7799823 - 7799724
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| ||||||||||||||||  ||||| ||||| || || ||||||| ||  |||||||||||||||||||||||||||||||| | |||||||||||    
T  7799823 cctatgtgtggttgcaacaaaatcatgaaaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 7799724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 19597576 - 19597477
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| ||||||||||||||||  ||||  ||||| || || |||||| |||||||||||||||||||||| || |||| |||||| | |||||||||||    
T  19597576 cctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcagttgacaaccctaaaaggagatattgaaaatacccaacctatatggtgagtt 19597477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 19401734 - 19401637
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgag 370  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||| ||| | |||||||||    
T  19401734 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgag 19401637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 19581140 - 19581083
Alignment:
Q  315 aattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| | |||||| ||||    
T  19581140 aattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtt 19581083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 231 - 397
Target Start/End: Complemental strand, 28557221 - 28557055
Alignment:
Q  231 atgtcctctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaacc 330  Q
    ||||| |||||||||||| | ||| |||| ||||||||| ||||||| ||||| ||||||||||  || | |||||| ||||| |||| || ||| || |    
T  28557221 atgtcttctcattccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatc 28557122  T
Q  331 ctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 397  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||  ||||||||| || ||||||    
T  28557121 ctaaaaggagatattggaaatgtccaacctttacggtgagttcgttgttataatactatgattgttg 28557055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 237 - 397
Target Start/End: Complemental strand, 707812 - 707652
Alignment:
Q  237 tctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaa 336  Q
    |||| ||||||| | ||| |||| ||||||||| ||||||| ||||| ||||||||||  || | |||||| ||||| |||| || ||| ||||||||||    
T  707812 tctcgttccattgctaatacatcatcaattgaattgcctatatgtgggtgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccctaaaa 707713  T
Q  337 ggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 397  Q
    ||||||| |||||||| ||||| |||| |||| |||  ||  ||||||||| |||||||||    
T  707712 ggagatattggaaatgtccaacctttacggtgtgttcgttgttataatactatgtttgttg 707652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 41385406 - 41385307
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| ||||||||||||||||  ||||  ||||| || || |||||| |||||||||||||||||||||| ||||||| |||||| | ||| |||||||    
T  41385406 cctatgtgtggttgcaacaaaattatgagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacccaacctatattgtgagtt 41385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 229 - 358
Target Start/End: Complemental strand, 31559201 - 31559072
Alignment:
Q  229 caatgtcctctcattccattaccaattcatcttcaattgaaatgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaa 328  Q
    ||||||| |||||||||||| |  | ||||| ||||||||  ||||||| |||||||||||||||| ||||| |||||| ||||| |||| |  | ||||    
T  31559201 caatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattacaa 31559102  T
Q  329 ccctaaaaggagatactggaaatgcccaac 358  Q
    |||||||| |||||| ||||||||||||||    
T  31559101 ccctaaaacgagatattggaaatgcccaac 31559072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 464 - 722
Target Start/End: Complemental strand, 22059588 - 22059336
Alignment:
Q  464 tagttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaatgtc 563  Q
    |||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||      |||||    ||||||| ||||| | ||     |     
T  22059588 tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgtcc------agtaatcgcagctgaatcatcaacctcatccatg 22059495  T
Q  564 acaaagcttccatgtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaaga 663  Q
    |  |||||||||||||||||||||||||||| | || |||||||  | ||||  ||  |||| ||  | ||| | || ||||| |||||||| |||||||    
T  22059494 aacaagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaaga 22059395  T
Q  664 agctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgg 722  Q
    |||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||    
T  22059394 agctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg 22059336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 22059773 - 22059674
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  22059773 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 22059674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 42827777 - 42827876
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| || |||||||||||||  ||||  ||||| || || |||||| |||||||||||||||||||||| ||||||| | |||| | |||||||||||    
T  42827777 cctatgtgcggttgcaacaaaattatgagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacacaacctatatggtgagtt 42827876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 271 - 360
Target Start/End: Complemental strand, 5386833 - 5386744
Alignment:
Q  271 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacat 360  Q
    ||||||||||  ||||||||||||| |||| |||||| || || ||||||||||| |||||||||||||| || ||||||||||||||||    
T  5386833 tgcctatttgctgttgcaacaaaaccatgaggatgttaatatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacat 5386744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 461 - 596
Target Start/End: Original strand, 51253126 - 51253252
Alignment:
Q  461 taatagttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaat 560  Q
    ||||||||||| | |||||||||||||||||||||||||  |||||||||||||  |||||||   ||| | ||      || |||||| |||||  |      
T  51253126 taatagttgcaggatgttcatatgggatgatgaaattgaaatacatcctccatagattcgtcc---agtggcaa------ctaaagcattacctttaatg 51253216  T
Q  561 gtcacaaagcttccatgtgattgcaattgtgaagag 596  Q
    ||||||||||||||||||||||||||||||||||||    
T  51253217 gtcacaaagcttccatgtgattgcaattgtgaagag 51253252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 5386034 - 5386122
Alignment:
Q  271 tgcctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaaca 359  Q
    ||||||||||||||| |||  |||| |||| |||||| || |  ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  5386034 tgcctatttgtggtttcaattaaaccatgaggatgttcatatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaaca 5386122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 464 - 523
Target Start/End: Original strand, 5386219 - 5386278
Alignment:
Q  464 tagttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtcc 523  Q
    |||||| ||||||| || |||||||||||| ||||| | |||||||||||||||||||||    
T  5386219 tagttgtaagttgtacaaatgggatgatgatattgaaggacatcctccatatgttcgtcc 5386278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 5496660 - 5496719
Alignment:
Q  465 agttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtcca 524  Q
    ||||| || |||||||||||| | ||||||||||||| ||||||| ||||||||||||||    
T  5496660 agttgtaaattgttcatatggaacgatgaaattgatgaacatcctacatatgttcgtcca 5496719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 31200070 - 31200120
Alignment:
Q  322 ttgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    |||||||||||||||||||||| ||||||| |||||| | |||||||||||    
T  31200070 ttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 31200120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 723
Target Start/End: Complemental strand, 3682 - 3429
Alignment:
Q  464 tagttgcaagttgttcatatgggatgatgaaattgatgtacatcctccatatgttcgtccaggagtagtaagaagagctgaagcatcaccttcgaatgtc 563  Q
    |||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||      |||||    ||||||| ||||| | ||     |     
T  3682 tagttgtaagttgtacatatgggatgatgaaattgaaggacatcctccatatgttcgtcc------agtaatcgcagctgaatcatcaacctcatccatg 3589  T
Q  564 acaaagcttccatgtgattgcaattgtgaagagatgttgaaagacattactggaataatgaaggaattcggagtcaacaaaaatgagaagttaaagaaga 663  Q
    |  |||||||||||||||||||||||||||| | || |||||||  | ||||  ||  |||| ||  | ||| | || ||||| |||||||| |||||||    
T  3588 aacaagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaaga 3489  T
Q  664 agctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg 723  Q
    |||| ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||||    
T  3488 agctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg 3429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 273 - 372
Target Start/End: Complemental strand, 3867 - 3768
Alignment:
Q  273 cctatttgtggttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 372  Q
    ||||| ||||||||||||||||  ||||  ||||| || || ||||||  ||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  3867 cctatgtgtggttgcaacaaaatcatgagaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtt 3768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 36900336 - 36900431
Alignment:
Q  302 gatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagttattttgtataatactttgtttgttg 397  Q
    |||||| ||||| |||| || ||| ||||||||||||||||| || ||||| ||||| |||| ||||||||  ||  ||||||||| |||||||||    
T  36900336 gatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactatgtttgttg 36900431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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