View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9228_low_3 (Length: 562)
Name: NF9228_low_3
Description: NF9228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9228_low_3 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 24277126 - 24277017
Alignment:
| Q |
1 |
acgtagcatagaaaattaagccaccaaagatgactaccaagtcaagaaatacgtataggcatcacaaactaagcaccatttgagtatctaagcatatttg |
100 |
Q |
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| T |
24277126 |
acgtagcatagaaaattaagccaccaaagatgactaccaagtcaagaaatacgtataggcatcacaaactaagcaccatttgagtatctaagcatatttg |
24277027 |
T |
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| Q |
101 |
ttttaataca |
110 |
Q |
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|||| ||||| |
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| T |
24277026 |
ttttgataca |
24277017 |
T |
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Target: scaffold0250 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 17952 - 17906
Alignment:
| Q |
376 |
tttgagtgaaaaggtcaagctgcagacttattggtggttcaaatcgt |
422 |
Q |
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| T |
17952 |
tttgtgtgaaaaggttaaggtgcagacttattggtggttaaaatcgt |
17906 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 21396395 - 21396353
Alignment:
| Q |
380 |
agtgaaaaggtcaagctgcagacttattggtggttcaaatcgt |
422 |
Q |
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| T |
21396395 |
agtgaaaaggtcaagcttcagatttattggtggttaaaatcgt |
21396353 |
T |
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