View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9228_low_4 (Length: 490)
Name: NF9228_low_4
Description: NF9228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9228_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 154 - 475
Target Start/End: Original strand, 31038010 - 31038337
Alignment:
| Q |
154 |
cgatttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgctatccataaggtcta |
253 |
Q |
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| T |
31038010 |
cgatttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgctatccataaagtcta |
31038109 |
T |
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| Q |
254 |
aataaaagacaatataaataaactgataaatgannnnnnnnncgatatcttttttacatttaagagagagaaa--------atatgattaagtttcttaa |
345 |
Q |
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| T |
31038110 |
aataaaagacaatataaataaactgataaatgattttttt--cgatatcttttttacatttaagagagagagagagagagaatatgattaagtttcttaa |
31038207 |
T |
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| Q |
346 |
gtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttctcgcattgttttaaactttttgcttt |
445 |
Q |
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| T |
31038208 |
gtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttctcacattgttttaaactttttgcttt |
31038307 |
T |
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| Q |
446 |
cccctttgctaatattgattacttcttgtt |
475 |
Q |
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| T |
31038308 |
cccctttgctaatattgattacttcttgtt |
31038337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 31037872 - 31037957
Alignment:
| Q |
18 |
tcattaatcttattggctaatactgttatattgttgtgtttgggtttcctcaatctatcatgaaaa-gttataaaagaaattgtac |
102 |
Q |
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| T |
31037872 |
tcattaatcttattggctaatactgttatattgttgtgtttgggtttcctcaatctatcatgaaaattttataaaagacattgtac |
31037957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 31027927 - 31028015
Alignment:
| Q |
324 |
aaaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatg |
412 |
Q |
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| T |
31027927 |
aaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatttccatattttttgttgtaagggatgaaagctctggtatg |
31028015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 31027765 - 31027847
Alignment:
| Q |
156 |
atttatgttagactgtttattgagccatataaaaggacaaacatgacacatgaatatatgtaaaagaccaaatgatttattgc |
238 |
Q |
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| T |
31027765 |
atttatgttagattttttattgagtgatattaagggacaaacatgacaaatgaatgtatgtaaaagacaaaatcatttcttgc |
31027847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 27560636 - 27560559
Alignment:
| Q |
342 |
ttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttc |
419 |
Q |
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| T |
27560636 |
ttaagtttgtttatgctatgatcatatttatttttgtattttttgatgtaagtgatgtaatcgctggtaagccttttc |
27560559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 4655972 - 4656029
Alignment:
| Q |
325 |
aaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
382 |
Q |
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| T |
4655972 |
aaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
4656029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 4647527 - 4647584
Alignment:
| Q |
325 |
aaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
382 |
Q |
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|||||||| |||||| |||||||||||||| |||| ||||||| |||||||||||| |
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| T |
4647527 |
aaatatgaccaagttttttaagtttgtttatactatgttcattttaatttctctattt |
4647584 |
T |
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