View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9228_low_7 (Length: 274)
Name: NF9228_low_7
Description: NF9228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9228_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 1083966 - 1083768
Alignment:
| Q |
22 |
ccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggac |
121 |
Q |
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| T |
1083966 |
ccgacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggac |
1083867 |
T |
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| Q |
122 |
tgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggccattttta |
220 |
Q |
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| T |
1083866 |
tgcacaacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggccattttta |
1083768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 33116448 - 33116552
Alignment:
| Q |
24 |
gacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116448 |
gacaaaccgaaactcattctccaatgataagtgaaatagaaacttatcatttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactg |
33116547 |
T |
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| Q |
124 |
cacaa |
128 |
Q |
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||||| |
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| T |
33116548 |
cacaa |
33116552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 33116549 - 33116637
Alignment:
| Q |
177 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaactttgcatgatagctaatcaagagtattat |
265 |
Q |
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| T |
33116549 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaaatttgcatgatagctaatcaagagtattat |
33116637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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