View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9228_low_9 (Length: 269)
Name: NF9228_low_9
Description: NF9228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9228_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 592668 - 592416
Alignment:
| Q |
1 |
tatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacac |
100 |
Q |
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| T |
592668 |
tatcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacac |
592569 |
T |
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| Q |
101 |
ttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttct |
200 |
Q |
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| T |
592568 |
tgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttct |
592469 |
T |
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| Q |
201 |
gagacttgattgttggttactttatgttgataattgtaaattcctctcttgca |
253 |
Q |
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| T |
592468 |
gagacttgattgtttgttactttatgttgataattgtaaattcctctcttgca |
592416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 579785 - 580014
Alignment:
| Q |
18 |
tcatgtttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcat |
116 |
Q |
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| T |
579785 |
tcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacactgcaacttgaattcat |
579875 |
T |
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| Q |
117 |
tatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttgg |
216 |
Q |
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| T |
579876 |
tatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttg |
579975 |
T |
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| Q |
217 |
ttactttatgttgataattgtaaattcctctcttgcaac |
255 |
Q |
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| T |
579976 |
tttctttatgttgataattgtaaattcctctcttgcaac |
580014 |
T |
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