View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9229_low_1 (Length: 806)

Name: NF9229_low_1
Description: NF9229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9229_low_1
NF9229_low_1
[»] chr4 (6 HSPs)
chr4 (13-788)||(683920-684695)
chr4 (295-390)||(33648198-33648293)
chr4 (266-389)||(16962819-16962941)
chr4 (294-373)||(35947000-35947079)
chr4 (260-369)||(53979034-53979143)
chr4 (276-382)||(42747086-42747191)
[»] chr1 (8 HSPs)
chr1 (260-400)||(21322508-21322648)
chr1 (280-384)||(31847686-31847790)
chr1 (308-390)||(29855926-29856008)
chr1 (247-369)||(50899060-50899182)
chr1 (280-381)||(10608923-10609024)
chr1 (280-348)||(14210643-14210711)
chr1 (274-384)||(622895-623005)
chr1 (312-369)||(52186903-52186960)
[»] chr8 (7 HSPs)
chr8 (237-387)||(35690505-35690655)
chr8 (295-387)||(34072906-34072998)
chr8 (312-384)||(33102096-33102168)
chr8 (328-395)||(38006564-38006631)
chr8 (275-369)||(43846270-43846364)
chr8 (312-381)||(22842156-22842225)
chr8 (295-384)||(12750160-12750249)
[»] chr2 (5 HSPs)
chr2 (309-392)||(6620000-6620083)
chr2 (292-387)||(44540662-44540757)
chr2 (292-379)||(13387327-13387414)
chr2 (280-384)||(32016437-32016542)
chr2 (292-381)||(44069850-44069938)
[»] chr6 (5 HSPs)
chr6 (296-390)||(1791925-1792019)
chr6 (320-390)||(2725843-2725913)
chr6 (260-390)||(3644732-3644862)
chr6 (320-366)||(35187910-35187956)
chr6 (323-356)||(6381260-6381293)
[»] chr5 (6 HSPs)
chr5 (308-390)||(9979662-9979744)
chr5 (288-349)||(32303648-32303709)
chr5 (280-384)||(37442567-37442670)
chr5 (274-335)||(28217979-28218040)
chr5 (234-334)||(28228862-28228962)
chr5 (322-379)||(34398078-34398134)
[»] chr7 (2 HSPs)
chr7 (278-384)||(3756380-3756486)
chr7 (293-382)||(31756828-31756919)
[»] chr3 (3 HSPs)
chr3 (292-393)||(35310401-35310502)
chr3 (292-381)||(36703073-36703162)
chr3 (257-349)||(40355902-40355994)


Alignment Details
Target: chr4 (Bit Score: 744; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 13 - 788
Target Start/End: Original strand, 683920 - 684695
Alignment:
Q  13 ataatactgctagttgttaaaatatattatcttaatatatatgctactaattgttaaatccaatgcatattacttcaactagtgataccaaatagaaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  683920 ataatactgctagttgttaaaatatattatcttaatatatatgctactaattgttaaatccaatgcatattacttcaactagtgataccaaatagaaaga 684019  T
Q  113 atagaaaaaagaacaaacatgttgcactgtttcactagcctaactaagatgttgatattaaaactcaagtttcatgtcctatctactattattgaagatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  684020 atagaaaaaagaacaaacatgttgcactgtttcactagcctaactaagatgttgatattaaaactcaagtttcatgtcctatctactattattgaagatg 684119  T
Q  213 atgacatacaatctcaaatttgagagaattgtttttctctcgtatgcttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  684120 atgacatacaatctcaaatttgagagaattgtttttctctcatatgcttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgaga 684219  T
Q  313 atacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactccaaaattaattattcatataac 412  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||    
T  684220 atacatctgcgtgagttaactcatgctcgactattttaacgggaatgaacaaaaatatacgagagaagagcagtactccaaatttgattattcatataac 684319  T
Q  413 atcttgatgaacaagaagcatgtttttgcttcaaatgatagctcaacatgttcccttatgtttgtcaatttgtgcttctttcttggttgggaggcaaaat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  684320 atcttgatgaacaagaagcatgtttttgcttcaaatgatagctcaacatgttcccttatgtttgtcaatttgtgcttctttcttggttgggaggcaaaat 684419  T
Q  513 taaatgctatgatgaatattttattggatgaatggtgaaagacttaggtgtgccaccacaagtaaaatagacagcacaactacagtactgcatatggcaa 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  684420 taaatgctatgatgaatattttattggatgaatggtgaaagacttaggtgtgccaccacaagtaaaatagacagcacaactaaagtactgcatatggcaa 684519  T
Q  613 taaaatgtatcaaactcaagaatccatgtttggaaacatcttagatcttacttataataattatatatcataatgactagactttcaagtcttttgaacc 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  684520 taaaatgtatcaaactcaagaatccatgtttggaaacatcttagatcttacttataataattatatgtcataatgactagactttcaagtcttttgaacc 684619  T
Q  713 ttaatttcatcataatcataatattacttgtgtttcatgattaacatgagattagtgtaaacatcatttggatatg 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  684620 ttaatttcatcataatcataatattacttgtgtttcatgattaacatgagattagtgtaaacatcatttggatatg 684695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 33648293 - 33648198
Alignment:
Q  295 agttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactc 390  Q
    |||||| ||||| ||||||||||||||||| ||||||||||  |||||||||||| | |||||||| |||||| ||||| ||||||| | ||||||    
T  33648293 agttaactcacgctgagaatacatctgcgttagttaactcacactcgactattttgacgggaatgagcaaaaatatatgggagaagaacggtactc 33648198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 266 - 389
Target Start/End: Complemental strand, 16962941 - 16962819
Alignment:
Q  266 tcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaa 365  Q
    ||||| ||| |||||||||||| |  || ||| || ||||  ||| ||||||||| |||||||||||||| ||||||||||||| || |||||||| |||    
T  16962941 tcattcctgctgagaaatacatatgcgtaagtcaactcacactgaaaatacatctacgtgagttaactcacgctcgactattttgataggaatgaataaa 16962842  T
Q  366 aacatatgagagaagagcagtact 389  Q
    ||| ||||  ||| ||||||||||    
T  16962841 aac-tatggaagacgagcagtact 16962819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 35947000 - 35947079
Alignment:
Q  294 gagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatg 373  Q
    ||||||| ||| | ||||||||||||| |||||||||||||| ||| ||||||||| |    ||||||||||||||||||    
T  35947000 gagttaactcatgttgagaatacatctacgtgagttaactcacgcttgactattttgacaaaaatgaacaaaaacatatg 35947079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 53979143 - 53979034
Alignment:
Q  260 ttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatg 359  Q
    ||||||||||| |  ||||||||||||  |   |||||||| ||||| ||| ||||||  || ||||||||||||| | |||||||||||||  ||||||    
T  53979143 ttttgttcattcccattgagaaatacacatgcttgagttaactcacgctgaaaatacacatgtgtgagttaactcacgttcgactattttaacaggaatg 53979044  T
Q  360 aacaaaaaca 369  Q
    | ||||||||    
T  53979043 agcaaaaaca 53979034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 42747191 - 42747086
Alignment:
Q  276 tgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgag 375  Q
    |||||||||||  |  ||||||||| ||||| |||||||||| ||||||||||||||  | |||| |||||||| | |||||| | |||||||| |||      
T  42747191 tgagaaatacacatgcgtgagttaactcacgctgagaatacacctgcgtgagttaac-gacgctctactattttgacgggaattagcaaaaacagatgga 42747093  T
Q  376 agaagag 382  Q
    |||||||    
T  42747092 agaagag 42747086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 260 - 400
Target Start/End: Original strand, 21322508 - 21322648
Alignment:
Q  260 ttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatg 359  Q
    ||||| ||||| | ||||||||||||||||  ||||||||| | ||| |||||||||| |||||||||||||||||  |||| ||||||| | |||| ||    
T  21322508 ttttgctcattcccgttgagaaatacatctgcgtgagttaacttacgttgagaatacacctgcgtgagttaactcaccctcggctattttgacgggattg 21322607  T
Q  360 aacaaaaacatatgagagaagagcagtactccaaaattaat 400  Q
    | |||||||| ||| |||||||||||||||| || ||||||    
T  21322608 agcaaaaacagatgggagaagagcagtactctaatattaat 21322648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 31847686 - 31847790
Alignment:
Q  280 aaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaa 379  Q
    ||||||||||||||||||||| ||||| | | ||| ||  |||||||||||||||||||||  ||||||||| ||||| ||||| ||||| ||| | |||    
T  31847686 aaatacatctatgtgagttaactcacggtaaaaatgcacttgcgtgagttaactcatgctcagctattttaacgggaacgaacataaacagatgggcgaa 31847785  T
Q  380 gagca 384  Q
    |||||    
T  31847786 gagca 31847790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 29856008 - 29855926
Alignment:
Q  308 tgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactc 390  Q
    ||||||||||| ||| ||||  |||||| ||||||||||||| |||||||||| |||||||| ||| | |||||| |||||||    
T  29856008 tgagaatacatttgcctgaggcaactcacgctcgactattttgatgggaatgagcaaaaacagatgggggaagagtagtactc 29855926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 369
Target Start/End: Original strand, 50899060 - 50899182
Alignment:
Q  247 ttctctcgtatgcttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactat 346  Q
    ||||||| | || ||||| ||||||| | |||||||||||  |  ||||||||| ||||| | |||||||| |||||| || ||| ||| ||||||||||    
T  50899060 ttctctcatctgtttttgctcatttccgctgagaaatacacatgcgtgagttaactcacgttaagaatacacctgcgttagctaagtcacgctcgactat 50899159  T
Q  347 tttaatgggaatgaacaaaaaca 369  Q
    ||||| | |||||| ||||||||    
T  50899160 tttaacgcgaatgagcaaaaaca 50899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 10608923 - 10609024
Alignment:
Q  280 aaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaa 379  Q
    |||||||  ||||| |||||||||||| | | ||| ||| |||||||||||||||| ||||   |||||| | ||||| ||||||||||||||  |||||    
T  10608923 aaatacacatatgtcagttaattcacgttaaaaatgcatatgcgtgagttaactcacgctctgttattttgacgggaacgaacaaaaacatataggagaa 10609022  T
Q  380 ga 381  Q
    ||    
T  10609023 ga 10609024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 14210711 - 14210643
Alignment:
Q  280 aaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattt 348  Q
    ||||||| ||||||||||||| ||||| ||| ||| |||||||||  |||||||||  |||||||||||    
T  14210711 aaatacacctatgtgagttaactcacgttgaaaatgcatctgcgtttgttaactcacactcgactattt 14210643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 274 - 384
Target Start/End: Original strand, 622895 - 623005
Alignment:
Q  274 gttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatg 373  Q
    ||||| ||||||| ||| ||||||||| ||||| ||| ||||||  |||| ||||||||||| ||||  ||||||| | ||| || | |||||||| |||    
T  622895 gttgaaaaatacacctacgtgagttaactcacgctgaaaatacacatgcgcgagttaactcaggctcagctattttgacggggataagcaaaaacagatg 622994  T
Q  374 agagaagagca 384  Q
     ||||| ||||    
T  622995 ggagaatagca 623005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 52186903 - 52186960
Alignment:
Q  312 aatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaaca 369  Q
    |||||| ||||||||||||||||| ||||| ||||||| |||| | ||| ||||||||    
T  52186903 aatacacctgcgtgagttaactcacgctcggctattttgatggaagtgagcaaaaaca 52186960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 237 - 387
Target Start/End: Original strand, 35690505 - 35690655
Alignment:
Q  237 agaattgtttttctctcgtatgcttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcg-tgagttaactca 335  Q
    ||||||| ||||||| | | || |||||||||||| | ||||||||| ||| |   |||||||| ||||| ||||| |||||||| | |||||||| |||    
T  35690505 agaattgcttttctcccatctgtttttgttcatttttattgagaaattcat-tgcatgagttaactcacgctgagactacatctggggtgagttaattca 35690603  T
Q  336 tgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagta 387  Q
     ||||||||||||| ||| |||||| |||||||||||||||||||| |||||    
T  35690604 cgctcgactattttgatgagaatgagcaaaaacatatgagagaagaacagta 35690655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 34072906 - 34072998
Alignment:
Q  295 agttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagta 387  Q
    |||||| ||||| |||||||||| || |||||||||||||||||||| ||||||||| |||||||| ||||| || ||| | || ||||||||    
T  34072906 agttaactcacgctgagaatacacctacgtgagttaactcatgctcgcctattttaacgggaatgagcaaaaccagatgggtgaggagcagta 34072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 33102096 - 33102168
Alignment:
Q  312 aatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagca 384  Q
    ||||||| |||||||||||||||| ||||| ||||||| | |||||||| |||||||| || |||||||||||    
T  33102096 aatacatttgcgtgagttaactcacgctcggctattttgacgggaatgagcaaaaacagataagagaagagca 33102168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 38006564 - 38006631
Alignment:
Q  328 ttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactccaaaa 395  Q
    |||||||| ||||||||||||||| |||||||| |||||||| ||| ||||||||| |||||| ||||    
T  38006564 ttaactcacgctcgactattttaacgggaatgagcaaaaacagatgggagaagagcggtactcaaaaa 38006631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 369
Target Start/End: Complemental strand, 43846364 - 43846270
Alignment:
Q  275 ttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaaca 369  Q
    |||| ||||||| ||  ||||||||| ||  | |||||||| |  |||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  43846364 ttgaaaaatacacctgcgtgagttaactcttgctgagaatatacatgcgtgagttaactcacgctcgactattttaacgggagtgaacaaaaaca 43846270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 22842225 - 22842156
Alignment:
Q  312 aatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaaga 381  Q
    ||||||| | |||||||||||||| ||||||||||||| | ||||||||  ||||||| ||| |||||||    
T  22842225 aatacatttacgtgagttaactcacgctcgactattttgacgggaatgagaaaaaacagatgggagaaga 22842156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 12750249 - 12750160
Alignment:
Q  295 agttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagca 384  Q
    ||||||||| |  ||| |||||| ||||||||||||||||| ||||| ||||||  | ||| ||||  ||||||| ||| ||||||||||    
T  12750249 agttaattcgcactgaaaatacacctgcgtgagttaactcacgctcggctatttggacggggatgaggaaaaacagatgggagaagagca 12750160  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 392
Target Start/End: Complemental strand, 6620083 - 6620000
Alignment:
Q  309 gagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactcca 392  Q
    ||||||||| |||| |||||||||||| |||| |||||||| | |||||||| |||||||| ||||||||||||||||||||||    
T  6620083 gagaatacacctgcatgagttaactcacgctcaactattttgacgggaatgagcaaaaacaaatgagagaagagcagtactcca 6620000  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 387
Target Start/End: Complemental strand, 44540757 - 44540662
Alignment:
Q  292 gtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagta 387  Q
    ||||||||| ||||| ||||||||||  ||||||| |||||||   |||||||||||| | |||||| | |||||||| |||||||||||||||||    
T  44540757 gtgagttaactcacgttgagaatacacatgcgtgaattaactcgctctcgactattttgacgggaataagcaaaaacagatgagagaagagcagta 44540662  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 13387414 - 13387327
Alignment:
Q  292 gtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaa 379  Q
    ||||||||| ||| ||||| ||||||  | |||||||||||||| ||| ||||||||| | ||||||||| ||||||| ||| |||||    
T  13387414 gtgagttaactcatgatgaaaatacacatacgtgagttaactcacgcttgactattttgacgggaatgaagaaaaacagatgggagaa 13387327  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 32016437 - 32016542
Alignment:
Q  280 aaatacatctatgtgagttaattcacgatgagaatacatctgcgtgag-ttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagaga 378  Q
    ||||||| ||| ||||||||| ||||| | | |||||| ||||||||| |||||||| ||| ||||||||| ||||||| ||  ||||| | ||| ||||    
T  32016437 aaatacacctacgtgagttaactcacgttaaaaatacacctgcgtgagtttaactcacgctggactattttgatgggaacgagtaaaaatagatgggaga 32016536  T
Q  379 agagca 384  Q
    ||||||    
T  32016537 agagca 32016542  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 44069938 - 44069850
Alignment:
Q  292 gtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaaga 381  Q
    ||||||||| ||||| ||| |||||| ||||||||||||||||| ||| |  |||| | || |||||||||||||||| ||| |||||||    
T  44069938 gtgagttaactcacgttgaaaatacacctgcgtgagttaactcacgcttggttattatgat-ggaatgaacaaaaacaaatgggagaaga 44069850  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 1792019 - 1791925
Alignment:
Q  296 gttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactc 390  Q
    ||||||||||| ||||||||||| ||| |||||||||||| | ||||| ||||| | || ||||||||||||||||||  |||||||| ||||||    
T  1792019 gttaattcacgttgagaatacatttgcatgagttaactcacgttcgacaattttgacggaaatgaacaaaaacatatgcaagaagagcggtactc 1791925  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 2725843 - 2725913
Alignment:
Q  320 tgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactc 390  Q
    |||||||||||||||| ||||| ||||||| | |||||||| |||||||| ||| ||||||||||||||||    
T  2725843 tgcgtgagttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaagagcagtactc 2725913  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 390
Target Start/End: Complemental strand, 3644862 - 3644732
Alignment:
Q  260 ttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatg 359  Q
    ||||| ||||||| | ||||||||| |  | ||| |||||| ||||  ||| |||||| |||| | |||||||||| |||  |||||||| | | |||||    
T  3644862 ttttgctcatttccgctgagaaatagacatgtgtaagttaactcacactgaaaatacacctgcataagttaactcacgcttaactattttgacgagaatg 3644763  T
Q  360 aacaaaaacatatgagagaagagcagtactc 390  Q
    | |||||| | ||||||||||||||||||||    
T  3644762 agcaaaaatagatgagagaagagcagtactc 3644732  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 35187956 - 35187910
Alignment:
Q  320 tgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaa 366  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||||    
T  35187956 tgcgtgagttaactcacggtcgactattttaacgggaatgagcaaaa 35187910  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 6381260 - 6381293
Alignment:
Q  323 gtgagttaactcatgctcgactattttaatggga 356  Q
    ||||||||||| ||||||||||||||||||||||    
T  6381260 gtgagttaacttatgctcgactattttaatggga 6381293  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 9979662 - 9979744
Alignment:
Q  308 tgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactc 390  Q
    ||||||||||||||||| |||||||||| ||||||||||||| |   ||||||||||||||| ||| ||||||| ||||||||    
T  9979662 tgagaatacatctgcgtaagttaactcacgctcgactattttgacatgaatgaacaaaaacagatgggagaagaacagtactc 9979744  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 32303709 - 32303648
Alignment:
Q  288 ctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactatttt 349  Q
    ||||||||||||| ||||| ||| ||||||  |||||||||||||||| |||||||||||||    
T  32303709 ctatgtgagttaactcacgctgaaaatacacatgcgtgagttaactcacgctcgactatttt 32303648  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 37442567 - 37442670
Alignment:
Q  280 aaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaa 379  Q
    ||||||| ||| ||||||||| ||| | ||| ||||||||||| |||||||||||| ||||| ||| ||| | |||||||| |||||||| |||  ||||    
T  37442567 aaatacacctacgtgagttaactcatgttgaaaatacatctgcatgagttaactcacgctcggcta-tttgacgggaatgagcaaaaacagatggaagaa 37442665  T
Q  380 gagca 384  Q
    |||||    
T  37442666 gagca 37442670  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 28218040 - 28217979
Alignment:
Q  274 gttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactca 335  Q
    |||||||||||||  |  || |||||| |||||||||||||||| |||||||||||||||||    
T  28218040 gttgagaaatacacatgcgtaagttaactcacgatgagaatacacctgcgtgagttaactca 28217979  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 28228962 - 28228862
Alignment:
Q  234 gagagaattgtttttctctcgtatgcttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaact 333  Q
    |||||||||| | ||||| | | || |||||||||| || | |||||||||||  |  || |||||| ||||||||||||||||  ||||||||||||||    
T  28228962 gagagaattgctcttctcccatctgtttttgttcatctccgctgagaaatacacatgcgtaagttaactcacgatgagaatacacatgcgtgagttaact 28228863  T
Q  334 c 334  Q
    |    
T  28228862 c 28228862  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 34398134 - 34398078
Alignment:
Q  322 cgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaa 379  Q
    |||||||||||||||||||  |||||| | ||| |||||||||||||||||| |||||    
T  34398134 cgtgagttaactcatgctcagctatttga-tggaaatgaacaaaaacatatgtgagaa 34398078  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 3756486 - 3756380
Alignment:
Q  278 agaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagag 377  Q
    ||||||||| |||  |||||||| ||||| ||||||| ||  |||  |||||||||||  |||||||||||| | |||||||| |||||||| ||| |||    
T  3756486 agaaatacacctacatgagttaactcacgctgagaatccacttgcacgagttaactcacactcgactattttgacgggaatgagcaaaaacaaatgggag 3756387  T
Q  378 aagagca 384  Q
    |||||||    
T  3756386 aagagca 3756380  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 293 - 382
Target Start/End: Original strand, 31756828 - 31756919
Alignment:
Q  293 tgagttaattcacgatgagaatacatctgcgtgagttaac--tcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagag 382  Q
    |||||||| ||||| |||||||| ||||||||||||||||  |||  ||| |||||||| | || ||||| |||||||| ||| ||||||||    
T  31756828 tgagttaactcacgctgagaatatatctgcgtgagttaactatcacactcaactatttttacggaaatgagcaaaaacagatgggagaagag 31756919  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 393
Target Start/End: Original strand, 35310401 - 35310502
Alignment:
Q  292 gtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaagagcagtactcc 391  Q
    ||||||||| ||||  |||||||||| ||| ||||||||||||| ||||| ||||||| | ||| |||| |||||| | ||| |||| |||| |||||||    
T  35310401 gtgagttaactcacactgagaatacacctgtgtgagttaactcacgctcggctattttgacggggatgagcaaaaatagatgggagatgagcggtactcc 35310500  T
Q  392 aa 393  Q
    ||    
T  35310501 aa 35310502  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 36703073 - 36703162
Alignment:
Q  292 gtgagttaattcacgatga-gaatacatctgcgtgagttaactcatgctcgactattttaatgggaatgaacaaaaacatatgagagaaga 381  Q
    ||||||||||||||| ||| ||||||| || ||||| |||||||| ||||||| |||| || || |||||||||||||| ||| |||||||    
T  36703073 gtgagttaattcacgctgaagaatacacctacgtgaattaactcacgctcgacaattt-aacggaaatgaacaaaaacagatgggagaaga 36703162  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 40355994 - 40355902
Alignment:
Q  257 tgcttttgttcatttctgttgagaaatacatctatgtgagttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactatttt 349  Q
    |||||||| || |||  ||| ||||||||||||  ||| ||||| ||||| ||| ||||||||| | |||||||||||| ||||| |||||||    
T  40355994 tgcttttgctcgttttcgttaagaaatacatctgcgtgggttaactcacgctgaaaatacatctacatgagttaactcacgctcggctatttt 40355902  T

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