View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9229_low_12 (Length: 208)

Name: NF9229_low_12
Description: NF9229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9229_low_12
NF9229_low_12
[»] chr4 (16 HSPs)
chr4 (12-192)||(40832867-40833048)
chr4 (11-191)||(38368447-38368631)
chr4 (15-191)||(14201196-14201375)
chr4 (12-145)||(29306810-29306943)
chr4 (11-191)||(51036713-51036894)
chr4 (11-191)||(46253704-46253891)
chr4 (21-191)||(7484939-7485107)
chr4 (11-145)||(55587984-55588118)
chr4 (61-112)||(51036906-51036957)
chr4 (61-112)||(7485121-7485172)
chr4 (61-112)||(14201130-14201181)
chr4 (61-112)||(29306956-29307007)
chr4 (61-112)||(38368642-38368693)
chr4 (61-112)||(40833060-40833111)
chr4 (61-112)||(55587922-55587973)
chr4 (61-112)||(46253902-46253953)
[»] chr3 (21 HSPs)
chr3 (11-191)||(16851334-16851515)
chr3 (11-191)||(26245554-26245736)
chr3 (11-191)||(28816273-28816456)
chr3 (15-191)||(11248778-11248956)
chr3 (12-191)||(11094751-11094934)
chr3 (11-145)||(34542436-34542570)
chr3 (15-145)||(27738872-27739002)
chr3 (92-191)||(12898444-12898543)
chr3 (61-145)||(10492609-10492694)
chr3 (61-112)||(34542581-34542632)
chr3 (61-112)||(11094689-11094740)
chr3 (61-112)||(11248974-11249025)
chr3 (61-112)||(12898371-12898422)
chr3 (61-112)||(26245748-26245799)
chr3 (61-112)||(27739021-27739072)
chr3 (61-112)||(16851526-16851577)
chr3 (61-112)||(28816467-28816518)
chr3 (159-191)||(10492712-10492744)
chr3 (159-191)||(34542387-34542419)
chr3 (11-44)||(10492702-10492735)
chr3 (12-44)||(34542396-34542428)
[»] chr8 (21 HSPs)
chr8 (11-191)||(43362526-43362708)
chr8 (15-191)||(32584694-32584871)
chr8 (11-191)||(38603528-38603710)
chr8 (11-191)||(27502236-27502419)
chr8 (11-191)||(31184763-31184947)
chr8 (11-141)||(43262656-43262786)
chr8 (11-191)||(914932-915114)
chr8 (62-145)||(44934247-44934330)
chr8 (11-65)||(28618192-28618246)
chr8 (61-112)||(915125-915176)
chr8 (61-112)||(28618130-28618181)
chr8 (61-112)||(31184958-31185009)
chr8 (61-112)||(32584629-32584680)
chr8 (61-112)||(43362719-43362770)
chr8 (61-105)||(43262790-43262834)
chr8 (61-112)||(38603721-38603772)
chr8 (68-112)||(27502181-27502225)
chr8 (159-191)||(43262602-43262634)
chr8 (159-191)||(44934348-44934380)
chr8 (11-44)||(43262611-43262644)
chr8 (11-44)||(44934338-44934371)
[»] chr2 (15 HSPs)
chr2 (11-191)||(36510132-36510314)
chr2 (11-145)||(30802323-30802457)
chr2 (11-145)||(29948425-29948559)
chr2 (11-144)||(10425471-10425604)
chr2 (29-133)||(39033285-39033389)
chr2 (61-191)||(39489718-39489849)
chr2 (61-145)||(29948333-29948417)
chr2 (61-112)||(39033211-39033262)
chr2 (61-112)||(30802468-30802519)
chr2 (61-112)||(36510325-36510376)
chr2 (61-112)||(10425409-10425459)
chr2 (11-44)||(29948567-29948600)
chr2 (159-191)||(39033408-39033440)
chr2 (159-191)||(29948577-29948609)
chr2 (159-191)||(30802271-30802303)
[»] chr1 (19 HSPs)
chr1 (11-191)||(30195056-30195238)
chr1 (11-189)||(43012381-43012562)
chr1 (11-145)||(37992206-37992340)
chr1 (11-145)||(47653356-47653490)
chr1 (11-145)||(49661108-49661242)
chr1 (15-145)||(4883865-4883995)
chr1 (11-191)||(585868-586048)
chr1 (61-145)||(47653264-47653348)
chr1 (61-129)||(19915042-19915110)
chr1 (61-112)||(4883799-4883850)
chr1 (61-112)||(37992143-37992194)
chr1 (61-112)||(49661253-49661304)
chr1 (61-112)||(30194994-30195045)
chr1 (61-112)||(586059-586110)
chr1 (61-112)||(43012319-43012370)
chr1 (159-191)||(19915147-19915179)
chr1 (159-191)||(49661059-49661091)
chr1 (11-44)||(47653498-47653531)
chr1 (159-187)||(37992358-37992386)
[»] chr7 (20 HSPs)
chr7 (11-191)||(46907754-46907936)
chr7 (11-191)||(42582327-42582507)
chr7 (11-191)||(42794415-42794596)
chr7 (11-191)||(49141288-49141472)
chr7 (11-191)||(38084415-38084599)
chr7 (11-145)||(28563925-28564059)
chr7 (11-145)||(27657638-27657772)
chr7 (61-145)||(27657546-27657630)
chr7 (68-145)||(45951433-45951510)
chr7 (62-112)||(46907947-46907997)
chr7 (61-112)||(42582518-42582569)
chr7 (61-112)||(49141226-49141277)
chr7 (61-112)||(38084353-38084404)
chr7 (61-112)||(42794607-42794656)
chr7 (159-191)||(27657790-27657822)
chr7 (159-191)||(28563875-28563907)
chr7 (61-105)||(28564078-28564122)
chr7 (158-190)||(45951384-45951416)
chr7 (11-44)||(27657780-27657813)
chr7 (11-44)||(28563884-28563917)
[»] chr6 (11 HSPs)
chr6 (11-191)||(2110128-2110310)
chr6 (20-191)||(13163943-13164118)
chr6 (11-145)||(6760238-6760372)
chr6 (11-145)||(8708581-8708715)
chr6 (61-145)||(8708489-8708573)
chr6 (61-112)||(6760383-6760434)
chr6 (61-112)||(2110065-2110116)
chr6 (61-112)||(13163874-13163925)
chr6 (159-191)||(6760188-6760220)
chr6 (11-44)||(6760197-6760230)
chr6 (11-44)||(8708723-8708756)
[»] chr5 (2 HSPs)
chr5 (15-191)||(3892117-3892297)
chr5 (61-112)||(3892051-3892102)
[»] scaffold0016 (1 HSPs)
scaffold0016 (61-191)||(68600-68731)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 40833048 - 40832867
Alignment:
Q  12 aagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40833048 aagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaat 40832949  T
Q  112 attcactattgttgaagatcaaagcagttataac-nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaagt 192  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  40832948 attcactattgttgaagatcaaagcagttataacaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaagt 40832867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 38368631 - 38368447
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38368631 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 38368532  T
Q  111 tattcactattgttgaagatcaaagcagttataac----nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  38368531 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 38368447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 14201196 - 14201375
Alignment:
Q  15 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14201196 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttagaaataaaatatt 14201295  T
Q  115 cactattgttgaagatcaaagcagttataac---nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  14201296 cactattgttgaagatcaaagcagttataacaaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 14201375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 29306943 - 29306810
Alignment:
Q  12 aagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29306943 aagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtaaaagttctttggaaataaaat 29306844  T
Q  112 attcactattgttgaagatcaaagcagttataac 145  Q
    ||||||||||||||||||||||||||||||||||    
T  29306843 attcactattgttgaagatcaaagcagttataac 29306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 51036894 - 51036713
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51036894 gaagaagatcaaatgagtaatacaattaaaataattgtgaatattttcgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 51036795  T
Q  111 tattcactattgttgaagatcaaagcagttataacnnnnnnnnga-tttaaaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||||||||||||||||||| |||||||         |  | |||||||||||||||||||||||||||||||||    
T  51036794 tattcactattgttgaagatcaaagcaattataacaaaaaaaaaagatcaaaggagtaatacaattaaaataaataaggaag 51036713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 46253891 - 46253704
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46253891 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 46253792  T
Q  111 tattcacta-----ttgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||     |||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||||||||||    
T  46253791 tattcactattgtattgttgaagatcaaaggagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 46253704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 7485107 - 7484939
Alignment:
Q  21 aaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7485107 aaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactat 7485008  T
Q  121 tgttgaagatcaaagcagttataacnnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||| ||||||||||         | |||||||| ||||||||||||||||||||||||||    
T  7485007 tgttgaagatcaaaacagttataacaaaaaaa--aattaaaggaataatacaattaaaataaataaggaag 7484939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 55587984 - 55588118
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  55587984 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaagtaaaataagaaaattccgagaaagttctttggaaataaaa 55588083  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  55588084 tattcactattgttgaagatcaaagcagttataac 55588118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 51036957 - 51036906
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51036957 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 51036906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 7485172 - 7485121
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7485172 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 7485121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 14201130 - 14201181
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14201130 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 14201181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 29307007 - 29306956
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29307007 aaaaaggaaataaaagaagaaaattccgtgaaagttttttggaaataaaata 29306956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 38368693 - 38368642
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38368693 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 38368642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 40833111 - 40833060
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40833111 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 40833060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 55587922 - 55587973
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55587922 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 55587973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 46253953 - 46253902
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  46253953 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttgaaaataaaata 46253902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 16851515 - 16851334
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16851515 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 16851416  T
Q  111 tattcactattgttgaagatcaaagcagttataac-nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  16851415 tattcactattgttgaagatcaaagcagttataacaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 16851334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 26245736 - 26245554
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26245736 gaagaagatcaaatgactaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 26245637  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  26245636 tattcactattgttgaagatcaaagcagttataacaaaaaataaagatttaaaggagtaatacaattaaaataaataaggaag 26245554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 28816456 - 28816273
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28816456 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaa 28816357  T
Q  111 tattcactattgttgaagatcaaagcagttataac---nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||| ||||||           ||||||||||||||||||||||||||||||||||||||    
T  28816356 tattcactattgttgaagatcaaagcagctataacaaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 28816273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 11248956 - 11248778
Alignment:
Q  15 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11248956 aagaccaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 11248857  T
Q  115 cactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||| ||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  11248856 cactattgttgaagatcaaaacagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 11248778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 11094751 - 11094934
Alignment:
Q  12 aagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11094751 aagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaatttcgtgaaagttttttggaaataaaat 11094850  T
Q  112 attcactattgttgaagatcaaagcagttataac----nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  11094851 attcactattgttgaagatcaaagcagttataacaaaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 11094934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 34542570 - 34542436
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34542570 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaataaaattccgtgaaagttctttggaaataaaa 34542471  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||| ||||||||||||||||||||||||||||||    
T  34542470 tatttactattgttgaagatcaaagcagttataac 34542436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 27739002 - 27738872
Alignment:
Q  15 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  27739002 aagatcaaatgagtaatacaattaaaataattgtgaatattttcgtaaaaaggaagtaaaagaagaaaattccgagaaagttctttggaaataaaatatt 27738903  T
Q  115 cactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||    
T  27738902 cactattgttgaagatcaaagcagttataac 27738872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 12898444 - 12898543
Alignment:
Q  92 aagttctttggaaataaaatattcactattgttgaagatcaaagcagttataacnnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||    
T  12898444 aagttctttggaaataaaatattcactattgttgaagatcaaagcagttataacaaaaaaaaaatttaaaggagtaatataattaaaataaataaggaag 12898543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 10492609 - 10492694
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatc-aaagcagttataac 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  10492609 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaatattcactaatgttgaagatcgaaaacagttataac 10492694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 34542632 - 34542581
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34542632 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 34542581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 11094689 - 11094740
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11094689 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 11094740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 11249025 - 11248974
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11249025 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 11248974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 12898371 - 12898422
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12898371 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 12898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 26245799 - 26245748
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26245799 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 26245748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 27739072 - 27739021
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27739072 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 27739021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 16851577 - 16851526
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  16851577 aaaaaggaaataaaagaagaaaatttcgttaaagttctttggaaataaaata 16851526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 28816518 - 28816467
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  28816518 aaaaaggaaataaaagaataaaatttcgtgaaagttctttggaaataaaata 28816467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 10492712 - 10492744
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  10492712 aaaggagtaatacaattaaaataaataaggaag 10492744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 34542419 - 34542387
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  34542419 aaaggagtaatacaattaaaataaataaggaag 34542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 10492702 - 10492735
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  10492702 gaagaagatcaaaggagtaatacaattaaaataa 10492735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 34542428 - 34542396
Alignment:
Q  12 aagaagatcaaatgagtaatacaattaaaataa 44  Q
    |||||||||||| ||||||||||||||||||||    
T  34542428 aagaagatcaaaggagtaatacaattaaaataa 34542396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 43362708 - 43362526
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43362708 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 43362609  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  43362608 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 43362526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 32584694 - 32584871
Alignment:
Q  15 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32584694 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 32584793  T
Q  115 cactattgttgaagatcaaagcagttataac-nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  32584794 cactattgttgaagatcaaagcagttataacaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 32584871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 38603710 - 38603528
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38603710 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaacttctttggaaataaaa 38603611  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  38603610 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 38603528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 27502236 - 27502419
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27502236 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 27502335  T
Q  111 tattcactattgttgaagatcaaagcagttataac---nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||| |||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||    
T  27502336 tattcactattattgaagatcaaagcagttataacaaaaaaaattaaatttaaaggagtaatacaattaaaataaataaggaag 27502419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 31184947 - 31184763
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31184947 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 31184848  T
Q  111 tattcactattgttgaagatcaaagcagttataac----nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||             ||| |||||||||||||||||||||||||||||||||    
T  31184847 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaaaaaattgaaaggagtaatacaattaaaataaataaggaag 31184763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 43262786 - 43262656
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43262786 gaagaagatcaaatgagtaatacaattaaaataattgtgaatattttcgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 43262687  T
Q  111 tattcactattgttgaagatcaaagcagtta 141  Q
    |||||||||||||||||||||||||||||||    
T  43262686 tattcactattgttgaagatcaaagcagtta 43262656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 915114 - 914932
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  915114 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaagtaaaagaagaaaattccgagaaagttatttgaaaataaaa 915015  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||| ||||||||||||||          ||||||||||||||||||| ||||||||||||||||||    
T  915014 tattcactattgttgaagataaaagcagttataacaaaaaaaaaagatttaaaggagtaatacatttaaaataaataaggaag 914932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 44934247 - 44934330
Alignment:
Q  62 aaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  44934247 aaaaggaaataaaagaagaaaatttcgtgaaagttttttggaaataaaatattcattattgttgaagatcaaagcatttataac 44934330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 28618192 - 28618246
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaa 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28618192 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaa 28618246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 915176 - 915125
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  915176 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 915125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 28618130 - 28618181
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28618130 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 28618181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 31185009 - 31184958
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31185009 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 31184958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 32584629 - 32584680
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32584629 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 32584680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 43362770 - 43362719
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43362770 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 43362719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 43262834 - 43262790
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43262834 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaa 43262790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 38603772 - 38603721
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  38603772 aaaaaggaaataaaagaataaaatttcgtgaaagttctttggaaataaaata 38603721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 27502181 - 27502225
Alignment:
Q  68 aaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||    
T  27502181 aaattaaagaagaaaatttcgtgaaagttctttggaaataaaata 27502225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 43262634 - 43262602
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  43262634 aaaggagtaatacaattaaaataaataaggaag 43262602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 44934348 - 44934380
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  44934348 aaaggagtaatacaattaaaataaataaggaag 44934380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 43262644 - 43262611
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  43262644 gaagaagatcaaaggagtaatacaattaaaataa 43262611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 44934338 - 44934371
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  44934338 gaagaagatcaaaggagtaatacaattaaaataa 44934371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 36510314 - 36510132
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36510314 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 36510215  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  36510214 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 36510132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 30802457 - 30802323
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30802457 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattctgtgaaagttctttggaaataaaa 30802358  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  30802357 tattcactattgttgaagatcaaagcagttataac 30802323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 29948425 - 29948559
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29948425 gaagaagatcaaatgactaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaatagaa 29948524  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  29948525 tattcactattgttgaagatcaaagcagttataac 29948559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 10425471 - 10425604
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10425471 gaagaagctcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaacaaaagaagaaaattccgtgaaagttctttgaaaataaaa 10425570  T
Q  111 tattcactattgttgaagatcaaagcagttataa 144  Q
    ||||||||||||||||||||||||||||||||||    
T  10425571 tattcactattgttgaagatcaaagcagttataa 10425604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 39033285 - 39033389
Alignment:
Q  29 aatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaag 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39033285 aatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaag 39033384  T
Q  129 atcaa 133  Q
    |||||    
T  39033385 atcaa 39033389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 39489718 - 39489849
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac-nnnnnnnngattta 159  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||         ||||||    
T  39489718 aaaaaggaaataaaagaagaaaatttcgtgaaagttatttggaaataaaatattcactattgttgaagatcaaaacagttataacaaaaaaaaagattta 39489817  T
Q  160 aaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||||||||||||||||||||||||    
T  39489818 aaggagtaatacaattaaaataaataaggaag 39489849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 29948333 - 29948417
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  29948333 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactaatgttgaagatcaaaacagttataac 29948417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 39033211 - 39033262
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39033211 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 39033262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 30802519 - 30802468
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30802519 aaaaaggaaataaaagaagaaaattccgtgaaagttctttgaaaataaaata 30802468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 36510376 - 36510325
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  36510376 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttgaaaataaaata 36510325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 10425409 - 10425459
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  10425409 aaaaatgaaataaaagaagaaaattccgtgaaagttc-ttggaaataaaata 10425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 29948567 - 29948600
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||||||||||||||||||||||||    
T  29948567 gaagaagatcaaatgagtaatacaattaaaataa 29948600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 39033408 - 39033440
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  39033408 aaaggagtaatacaattaaaataaataaggaag 39033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 29948577 - 29948609
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    ||| |||||||||||||||||||||||||||||    
T  29948577 aaatgagtaatacaattaaaataaataaggaag 29948609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 30802303 - 30802271
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||| |||||||||||||||||||||||    
T  30802303 aaaggagtagtacaattaaaataaataaggaag 30802271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 30195056 - 30195238
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30195056 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 30195155  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  30195156 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 30195238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 43012381 - 43012562
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43012381 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttctgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 43012480  T
Q  111 tattcactattgttgaagatcaaagcagttataac---nnnnnnnngatttaaaggagtaatacaattaaaataaataagga 189  Q
    |||||| ||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  43012481 tattcattattgttgaagatcaaagcagttataacaaaaaaaaaaagatttaaaggagtaatacaattaaaataaataagga 43012562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 37992206 - 37992340
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37992206 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 37992305  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  37992306 tattcactattgttgaagatcaaagcagttataac 37992340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 47653356 - 47653490
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47653356 gaagaagatcaaatgactaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 47653455  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  47653456 tattcactattgttgaagatcaaagcagttataac 47653490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 49661242 - 49661108
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49661242 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttcgaaataaaa 49661143  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  49661142 tattcactattgttgaagatcaaagcagttataac 49661108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 4883865 - 4883995
Alignment:
Q  15 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4883865 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 4883964  T
Q  115 cactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||| ||||||||||    
T  4883965 cactattgttgaagatcaaaacagttataac 4883995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 586048 - 585868
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||||| |||||||||||||||||||||    
T  586048 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtgaaaaggaagtaaaagaa--aaattccgagaaagttctttggaaataaaa 585951  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||| ||||||||||||||||||    
T  585950 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacatttaaaataaataaggaag 585868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 47653264 - 47653348
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  47653264 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactaatgttgaagatcaaaacagttataac 47653348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 19915042 - 19915110
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaaga 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  19915042 aaaaaggaaataaaagaagaaaattccatgaaagttctttggaaataaaatattcactgttgttgaaga 19915110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 4883799 - 4883850
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4883799 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 4883850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 37992143 - 37992194
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37992143 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 37992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 49661304 - 49661253
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49661304 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 49661253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 30194994 - 30195045
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30194994 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 30195045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 586110 - 586059
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  586110 aaaaatgaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 586059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 43012319 - 43012370
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  43012319 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttgaaaataaaata 43012370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 19915147 - 19915179
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  19915147 aaaggagtaatacaattaaaataaataaggaag 19915179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 49661091 - 49661059
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  49661091 aaaggagtaatacaattaaaataaataaggaag 49661059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 47653498 - 47653531
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    |||||||||||||||||||||| |||||||||||    
T  47653498 gaagaagatcaaatgagtaatagaattaaaataa 47653531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 37992358 - 37992386
Alignment:
Q  159 aaaggagtaatacaattaaaataaataag 187  Q
    |||||||||||||||||||||||||||||    
T  37992358 aaaggagtaatacaattaaaataaataag 37992386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 46907936 - 46907754
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46907936 gaagaagatcaaatgagtaacacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 46907837  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  46907836 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 46907754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 42582507 - 42582327
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42582507 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 42582408  T
Q  111 tattcactattgttgaagatcaaagcagttataacnnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||| || |||||||||||||||||||||||         | |||||||||||||||||||||||||||||||||||    
T  42582407 tattcactgttattgaagatcaaagcagttataacaaaaaaaaaaattaaaggagtaatacaattaaaataaataaggaag 42582327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 42794596 - 42794415
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42794596 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaa-ttctttggaaataaaa 42794498  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  42794497 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 42794415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 49141288 - 49141472
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49141288 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttatttggaaataaaa 49141387  T
Q  111 tattcac---tattgttgaagatcaaagcagttataac-nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||   ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  49141388 tattcactattattgttgaagatcaaagcagttataacaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 49141472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 38084415 - 38084599
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38084415 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattctgtgaaagttctttggaaataaaa 38084514  T
Q  111 tattcactattgttgaagatcaaagcagttataacnnnnnnnnga----tttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||         |    ||||||||||||||||||||||||||||||| ||||    
T  38084515 tattcactattgttgaagatcaaagcagttataacaaaaaaataataattttaaaggagtaatacaattaaaataaataatgaag 38084599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 28564059 - 28563925
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  28564059 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttctgtaaaaaggaaataaaagaagaaaattccatgaaagttctctggaaataaaa 28563960  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  28563959 tattcactattgttgaagatcaaagcagttataac 28563925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 27657638 - 27657772
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27657638 gaagaagatcaaatgactaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattatgtgaaagttctttggaaataaaa 27657737  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||| ||||||||||||||||||||||||||||    
T  27657738 tattcattattgttgaagatcaaagcagttataac 27657772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 27657546 - 27657630
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  27657546 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactaatgttgaagatcaaaacagttataac 27657630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 45951510 - 45951433
Alignment:
Q  68 aaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45951510 aaataaaagaagaaaatttcgtgaaaattctttggaaataaaatattcactattgttgaagatccaagcagttataac 45951433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 46907997 - 46907947
Alignment:
Q  62 aaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46907997 aaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 46907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 42582569 - 42582518
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  42582569 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttgtaaataaaata 42582518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 49141226 - 49141277
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  49141226 aaaaaggaaataaaagaagaaaatttcgtgaaagttctatggaaataaaata 49141277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 38084353 - 38084404
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  38084353 aaaaatgaaataaaagaagaaaattccgtgaaagtcctttgaaaataaaata 38084404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 42794656 - 42794607
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  42794656 aaaaaggaaataaaagaagaaaatttcgtgaa--ttctttggaaataaaata 42794607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 27657790 - 27657822
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  27657790 aaaggagtaatacaattaaaataaataaggaag 27657822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 28563907 - 28563875
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  28563907 aaaggagtaatacaattaaaataaataaggaag 28563875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 28564122 - 28564078
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaa 105  Q
    ||||| ||||||||||||||||||| |||||||||||||| ||||    
T  28564122 aaaaaagaaataaaagaagaaaatttcgtgaaagttcttttgaaa 28564078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 45951416 - 45951384
Alignment:
Q  158 taaaggagtaatacaattaaaataaataaggaa 190  Q
    |||||||||||||||||||||||||||||||||    
T  45951416 taaaggagtaatacaattaaaataaataaggaa 45951384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 27657780 - 27657813
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  27657780 gaagaagatcaaaggagtaatacaattaaaataa 27657813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 28563917 - 28563884
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  28563917 gaagaagatcaaaggagtaatacaattaaaataa 28563884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 2110128 - 2110310
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2110128 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttgaaaataaaa 2110227  T
Q  111 tattcactattgttgaagatcaaagcagttataac--nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  2110228 tattcactattgttgaagatcaaagcagttataacaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 2110310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 13163943 - 13164118
Alignment:
Q  20 caaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcacta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13163943 caaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcacta 13164042  T
Q  120 ttgttgaagatcaaagcagttataacnnnnnnnnga----tttaaaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||||||||||||||||||         |    ||||||||||||||||||||||||||||||||||||    
T  13164043 ttgttgaagatcaaagcagttataacaaaaaaaaaaaaattttaaaggagtaatacaattaaaataaataaggaag 13164118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 6760372 - 6760238
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6760372 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaatgaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 6760273  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||| || |||||||    
T  6760272 tattcactattgttgaagatcaaaacaattataac 6760238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 8708581 - 8708715
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaa 110  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  8708581 gaagaagattaaatgactaatacaattaaaataattgtgaatatttccgtacaaaggaaataaaagaagaaaattccgtgaaagttctttagaaataaaa 8708680  T
Q  111 tattcactattgttgaagatcaaagcagttataac 145  Q
    |||||||||||||||||||||||||||||||||||    
T  8708681 tattcactattgttgaagatcaaagcagttataac 8708715  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 8708489 - 8708573
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  8708489 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactaatgttgaagatcaaaacagttataac 8708573  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 6760434 - 6760383
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6760434 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 6760383  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 2110065 - 2110116
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2110065 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 2110116  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 13163874 - 13163925
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13163874 aaaaaggaaataaaagaagaaaatttcgtgaaagttctttggaaataaaata 13163925  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 6760220 - 6760188
Alignment:
Q  159 aaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||||    
T  6760220 aaaggagtaatacaattaaaataaataaggaag 6760188  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 6760230 - 6760197
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    ||||||||||||| ||||||||||||||||||||    
T  6760230 gaagaagatcaaaggagtaatacaattaaaataa 6760197  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 8708723 - 8708756
Alignment:
Q  11 gaagaagatcaaatgagtaatacaattaaaataa 44  Q
    |||||||||||||||||||||| |||||||||||    
T  8708723 gaagaagatcaaatgagtaatataattaaaataa 8708756  T

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Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 3892117 - 3892297
Alignment:
Q  15 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3892117 aagatcaaatgagtaatacaattaaaataattgtgaatatttccgtaaaaaggaaataaaagaagaaaattccgtaaaagttctttggaaataaaatatt 3892216  T
Q  115 cactattgttgaagatcaaagcagttataac----nnnnnnnngatttaaaggagtaatacaattaaaataaataaggaag 191  Q
    |||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  3892217 cactattgttgaagatcaaagcagttataacaaaaaaaaaaaagatttaaaggagtaatacaattaaaataaataaggaag 3892297  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 3892051 - 3892102
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaata 112  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||    
T  3892051 aaaaaggaaataaaagaagaaaattttgtgaaagttatttggaaataaaata 3892102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 68731 - 68600
Alignment:
Q  61 aaaaaggaaataaaagaagaaaattccgtgaaagttctttggaaataaaatattcactattgttgaagatcaaagcagttataac-nnnnnnnngattta 159  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||          | |||    
T  68731 aaaaaggaaataaaagaagaaaattccatgaaagttctttggaaataaaatattcactattattgaagatcaaagcagtaataacaaaacaaaaaaatta 68632  T
Q  160 aaggagtaatacaattaaaataaataaggaag 191  Q
    ||||||||||||||||||||||||||||||||    
T  68631 aaggagtaatacaattaaaataaataaggaag 68600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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