View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9229_low_2 (Length: 774)
Name: NF9229_low_2
Description: NF9229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9229_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 21764925 - 21764516
Alignment:
| Q |
16 |
tgtgcaaattaaatgtataaatctaagaattacacaatcaacatgttcaaatttaatgtcaacaatttaattttaaaggcgctgctaataaaatatacta |
115 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
21764925 |
tgtgcaaattcaatgtataaatccaagaattacacaatcagcatgttcaaattgaatgtcaacaatttaattttaaaggtcctgctaatgaaatatacta |
21764826 |
T |
|
| Q |
116 |
agaagaaacctattagcatagtatacaaattttctaaaagaaagacaatcgttataaatgttgataagctcaatcatcaccaaaataagctgctgcgtct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| | ||||||| |
|
|
| T |
21764825 |
agaagaaacctattagcatagtatacaaattttctaaaagaaagacaatcattataaatgttgataagctctatcatcacaaaaataa---gttgcgtct |
21764729 |
T |
|
| Q |
216 |
gcatgtaaattcacgctaaaatgatttcatacgcttgtgatgaataattgaaagaatggatagatgtagattataaaaattcaatcaa--------aagt |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
21764728 |
gcatgtaaattcacgctaaaaggatttcatacgcttgtgatgaataattgaaagaattgatagatgttgattataaaaattcaatcaagcttacgtaagt |
21764629 |
T |
|
| Q |
308 |
actatcagaagaaaaatactgaatctaatcaacaaatacaaagttaaggaacaagcaaaccctaatagatgaatatgttatgacaaacctaaaacggtga |
407 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
21764628 |
actatcagaagaaacatattgaatctaatcaacaaatacaaagttaaggaacaatcaaaccctaatagatgaatgtgttacgacaaacctaaaatggtga |
21764529 |
T |
|
| Q |
408 |
acagtaccaaatg |
420 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
21764528 |
acaatacgaaatg |
21764516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 42860142 - 42859689
Alignment:
| Q |
18 |
tgcaaattaaatgtataaatctaagaattacacaatcaacatgttcaaatttaatgtcaacaatttaattttaaaggcgctgctaataaaatatactaag |
117 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||| |||| ||||| |||||| ||||||||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
42860142 |
tgcaaattcaatgtataaatccaaggattacaccatcagcatgtgcaaattgaatgtcaacaatttaattttaaaggtg------ataatatatactaag |
42860049 |
T |
|
| Q |
118 |
aagaaacctattagcatagtatacaaattttctaaaagaaagacaatcgttataaatgttgataagctcaatcatcaccaaaataagctgctgcgtctgc |
217 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||| |
|
|
| T |
42860048 |
aagaaacctattagcacagtatacaatttttctaaaagaaagacaatcgttataaatgttgataagctctatcatcaccaaaataa---gttgcatctgc |
42859952 |
T |
|
| Q |
218 |
atgtaaattcacgctaaaatgatttcatacgcttgtgatgaataattgaaagaatggatagatgtagattataaaaattcaatcaa--------aagtac |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
42859951 |
atgtaaattcacgctaaaagtatttcatacgcttgtgatgaataattgaaagaatggatagatgttgattataaaaattcaatcaaacttacgtaagtac |
42859852 |
T |
|
| Q |
310 |
tatcagaagaaaaatactgaatct---------------aatcaacaaatacaaagttaaggaacaagcaaaccctaatag---atgaatatgttatgac |
391 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
42859851 |
tattagaagaaacatactgaatctaatctaatcaaatcaaatcaacaaatacaaagttaaggaacaagcaaaccctaatagattatgaaaatgttacgac |
42859752 |
T |
|
| Q |
392 |
aaacctaaaacggtgaacagtaccaaatgggagtgtaaatatgttttgtttcattatataatt |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42859751 |
aaacctaaaacggtgaacagtaccaaatgggagcgtaaatatgttttgtttcattatataatt |
42859689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University