View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9229_low_5 (Length: 634)

Name: NF9229_low_5
Description: NF9229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9229_low_5
NF9229_low_5
[»] chr3 (7 HSPs)
chr3 (18-290)||(25228884-25229156)
chr3 (18-290)||(25217071-25217343)
chr3 (18-290)||(25233611-25233883)
chr3 (335-630)||(25216756-25217063)
chr3 (335-498)||(25228715-25228876)
chr3 (18-120)||(25225733-25225835)
chr3 (346-444)||(25233486-25233584)
[»] chr5 (10 HSPs)
chr5 (30-283)||(17157364-17157617)
chr5 (30-283)||(17161286-17161539)
chr5 (30-282)||(17164330-17164582)
chr5 (30-282)||(28148642-28148894)
chr5 (30-283)||(28153297-28153550)
chr5 (30-283)||(26399186-26399439)
chr5 (335-436)||(17161647-17161748)
chr5 (335-388)||(17157723-17157776)
chr5 (301-338)||(25889759-25889796)
chr5 (301-337)||(23954551-23954587)
[»] chr1 (3 HSPs)
chr1 (31-190)||(19317404-19317563)
chr1 (301-334)||(10923116-10923149)
chr1 (300-337)||(32216441-32216478)
[»] chr2 (1 HSPs)
chr2 (303-337)||(18947275-18947309)
[»] chr8 (1 HSPs)
chr8 (301-337)||(43643360-43643396)
[»] chr7 (2 HSPs)
chr7 (301-337)||(18797692-18797728)
chr7 (302-337)||(29173887-29173922)
[»] chr4 (2 HSPs)
chr4 (301-337)||(25184503-25184539)
chr4 (301-337)||(33816301-33816337)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 25229156 - 25228884
Alignment:
Q  18 gaacacacccaagaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 117  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25229156 gaacacaccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 25229057  T
Q  118 attgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaat 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  25229056 attgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagtagaagt 25228957  T
Q  218 tctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25228956 tctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 25228884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 25217343 - 25217071
Alignment:
Q  18 gaacacacccaagaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 117  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25217343 gaacacaccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 25217244  T
Q  118 attgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaat 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  25217243 attgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagtagaagt 25217144  T
Q  218 tctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 290  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  25217143 tctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacgttaagttcaatat 25217071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 25233883 - 25233611
Alignment:
Q  18 gaacacacccaagaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 117  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25233883 gaacacaccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 25233784  T
Q  118 attgtttagataaatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaat 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  25233783 attgtttagataaatggcttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagtagaagt 25233684  T
Q  218 tctttcatttgatttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagttcaatat 290  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  25233683 tctttcatttgatttttgtgccatccgtagtgatagagatcgtgatgattggtggctacgttaagttcaatat 25233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 335 - 630
Target Start/End: Complemental strand, 25217063 - 25216756
Alignment:
Q  335 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaat 434  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25217063 tttcattattgtttgtattcatttaacaaatttatacaagatctcataatatatatttgtcatatcaaattatcgtagtaaatgcatttaattgagtaat 25216964  T
Q  435 aatcaatattcttttttaggggacaaataatcgatgattaaaaccttcatatcaatttatcaaactgac-------------ttttttgtttatgaaaga 521  Q
    |||||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||             |||||| |||||||||||    
T  25216963 aatcaatatt-ttttttaggggacaaataatcgataattggaaccttcatatcaatttatcaaactgactttttttttttttttttttatttatgaaaga 25216865  T
Q  522 aaaccaatttctttgttggtaagtaaagtaactaagtagtaagtatattaaggaattttgatatatcccacatttttaatataaaaaatgttttaagggt 621  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  25216864 aaaccaacttctttgttggtaagtaaagtaactaggtagtaagtatattaaggagttttgatatatcccacattgttaatatcaaaaatgttttaagggt 25216765  T
Q  622 ccaattcat 630  Q
    | |||||||    
T  25216764 caaattcat 25216756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 335 - 498
Target Start/End: Complemental strand, 25228876 - 25228715
Alignment:
Q  335 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaat 434  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  25228876 tttcattattgtttgtatacaattaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatc-tagtaaatgcatttaattaagtaat 25228778  T
Q  435 aatcaatattcttttttaggggacaaataatcgatgattaaaaccttcatatcaatttatcaaa 498  Q
    ||||| || | ||||||||||||  ||||||| || |||||||  |||||||||||||||||||    
T  25228777 aatcattaat-ttttttaggggagtaataatcaataattaaaattttcatatcaatttatcaaa 25228715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 25225835 - 25225733
Alignment:
Q  18 gaacacacccaagaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 117  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25225835 gaacacaccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaac 25225736  T
Q  118 att 120  Q
    |||    
T  25225735 att 25225733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 346 - 444
Target Start/End: Complemental strand, 25233584 - 25233486
Alignment:
Q  346 tttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaataatcaatatt 444  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  25233584 tttgtatacaattaacaaatttatacaagattccatgatatatatttatcatatcaaattatcatagtaaatgcatttaattgagtaataatcaatatt 25233486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 17157364 - 17157617
Alignment:
Q  30 gaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagata 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  17157364 gaagatgttgaatgtgctgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgaccatatgtatcacaaatattgtttagata 17157463  T
Q  130 aatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaattctttcatttga 229  Q
    ||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |    
T  17157464 aatggattagtttcaagaaccacacttgtcccctttgcagagaatcattgagaccagaaagggccatcactgagcttggagctgaaattctttcatttaa 17157563  T
Q  230 tttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 283  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  17157564 tttttgtgtcatccatagtgatcgagatcgtgatgattggtggctacgttgagt 17157617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 17161286 - 17161539
Alignment:
Q  30 gaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagata 129  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  17161286 gaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgaccatatgtatcacaaatattgtttagata 17161385  T
Q  130 aatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaattctttcatttga 229  Q
    ||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |    
T  17161386 aatggattagtttcaagaaccacacttgtcccctttgcagagaatcattgagaccagaaagggccatcactgagcttggagctgaaattctttcatttaa 17161485  T
Q  230 tttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 283  Q
    |||||||| ||| | |||||||||||||||||||||||||||||| ||||||||    
T  17161486 tttttgtgtcatccatagtgatcgagatcgtgatgattggtggctgcgttgagt 17161539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 17164330 - 17164582
Alignment:
Q  30 gaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagata 129  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  17164330 gaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgaccatatgtaccacaaatattgtttagata 17164429  T
Q  130 aatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaattctttcatttga 229  Q
    ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |    
T  17164430 aatggattggtttcaagaaccacacttgtcccctttgtagagaatcattgagaccagaaagggccatcactgagcttggagctgaaattctttcatttaa 17164529  T
Q  230 tttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgag 282  Q
    |||||||| ||| |||| ||||||||||||||||||||  |||||||||||||    
T  17164530 tttttgtgtcatccgtaatgatcgagatcgtgatgatttttggctacgttgag 17164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 28148642 - 28148894
Alignment:
Q  30 gaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagata 129  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||| ||||||| ||||    
T  28148642 gaagatgtagaatgtgttgtgtgtctctccaaaatagaagaaggagatgaaattagagtattaaggtgtgatcatatgtatcataaaaattgtttggata 28148741  T
Q  130 aatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaattctttcatttga 229  Q
    ||||| || | ||||| ||||| ||||| |||||||| |||||||| ||||||||| | |||||||||||||||| |||||| ||| |||||  |||| |    
T  28148742 aatgggttggattcaaaaaccacacttgccctctttgcagagaatcgttgagaccaaagagagccatcactgagcttggagctgaagttcttgaatttaa 28148841  T
Q  230 tttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgag 282  Q
    ||||| |||||||||||  ||||| |||| ||||||||||||| |||||||||    
T  28148842 tttttttgccattcgtaaggatcgtgatcatgatgattggtggttacgttgag 28148894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 28153297 - 28153550
Alignment:
Q  30 gaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagata 129  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||| ||||||| ||||    
T  28153297 gaagatgtagaatgtgttgtatgtctctccaaaatagaagaaggagatgaaattagagtattaaggtgtgatcatatgtatcataaaaattgtttggata 28153396  T
Q  130 aatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaattctttcatttga 229  Q
    ||||| || | ||||| ||||| ||||| |||||||| |||||||||||||||||| | ||||| |||||||||| |||||| ||| |||||  |||| |    
T  28153397 aatgggttggattcaaaaaccacacttgccctctttgcagagaatcattgagaccaaagagagctatcactgagcttggagctgaagttcttgaatttaa 28153496  T
Q  230 tttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 283  Q
    |||||  ||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  28153497 ttttttcgccattcgtaaggatcgcgatcgtgatgattggtggctacgctgagt 28153550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 26399439 - 26399186
Alignment:
Q  30 gaagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagata 129  Q
    |||||||| ||||||  ||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||| ||| | | ||||||| ||||    
T  26399439 gaagatgtagaatgttctgtgtgtctatgtaaaatagaagaaggagatgagattagagtattgaggtgtgatcatatgtttcatagatattgtttggata 26399340  T
Q  130 aatggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaagagccatcactgagcatggagcagaaattctttcatttga 229  Q
     |||| || ||||||||||| | |||||||| ||||| ||||||||||||||| ||| ||| ||||||||||||| |||||  ||  ||||||||||| |    
T  26399339 gatgggttggtttcaagaacaacacttgtccactttgcagagaatcattgagatcaggaagggccatcactgagcttggagttgatgttctttcatttaa 26399240  T
Q  230 tttttgtgccattcgtagtgatcgagatcgtgatgattggtggctacgttgagt 283  Q
    |||||||   |||  |||||||||||| | ||||||||||||| ||||||||||    
T  26399239 tttttgtaatatttatagtgatcgagaacatgatgattggtggttacgttgagt 26399186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 17161647 - 17161748
Alignment:
Q  335 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatatatttgtcatatcaaattatcgtagtaaatgtatttaattgagtaat 434  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||   | ||| |||||||||||||||| |||| |||||||||||||||    
T  17161647 tttcattattgtttgtatacaattaacaaatttatggaagatctcatgatatatgcctttcaaatcaaattatcgtagtgaatgcatttaattgagtaat 17161746  T
Q  435 aa 436  Q
    ||    
T  17161747 aa 17161748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 17157723 - 17157776
Alignment:
Q  335 tttcattattgtttgtatacatttaacaaatttatacaagatctcatgatatat 388  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||||||||||    
T  17157723 tttcattattgtttgtatactactaacaaatttatgcaagatctcatgatatat 17157776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 25889796 - 25889759
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgacttttc 338  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  25889796 agggagcttctacgatgcagtcaggaaactgacttttc 25889759  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 23954551 - 23954587
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgactttt 337  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  23954551 agggagcttctatggtgcagtcaggaaactgactttt 23954587  T

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Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 19317404 - 19317563
Alignment:
Q  31 aagatgttgaatgtgttgtgtgtctctgcaaaatagaagaaggagatgagattagtgtattgagatgtgatcatatgtatcacaaacattgtttagataa 130  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||| | ||||||||| |||||    
T  19317404 aagatgtagaatgtgttgtgtgtctatgcaaaatagaagaaggagatgatattagagtattgaagtgtgatcatatgtatcatagacattgtttggataa 19317503  T
Q  131 atggtttagtttcaagaaccatacttgtcctctttgtagagaatcattgagaccagaaag 190  Q
    |||| ||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  19317504 atgggttgctttcaaaaaccacacttgtcctctttgtagagaatcattgagaccagaaag 19317563  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 10923149 - 10923116
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgact 334  Q
    |||||||||||||| |||||||||||||||||||    
T  10923149 agggagcttctatggtgcagtcagaaaactgact 10923116  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 32216478 - 32216441
Alignment:
Q  300 tagggagcttctatgatgcagtcagaaaactgactttt 337  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  32216478 tagggagcttctacggtgcagtcagaaaactgactttt 32216441  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 18947275 - 18947309
Alignment:
Q  303 ggagcttctatgatgcagtcagaaaactgactttt 337  Q
    |||||||||||||||||||||||||||||||||||    
T  18947275 ggagcttctatgatgcagtcagaaaactgactttt 18947309  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 43643360 - 43643396
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgactttt 337  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43643360 agggagcttctatggtgcagtcagaaaactgactttt 43643396  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 18797728 - 18797692
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgactttt 337  Q
    ||||||||| |||||||||||||||||||||||||||    
T  18797728 agggagcttttatgatgcagtcagaaaactgactttt 18797692  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 29173922 - 29173887
Alignment:
Q  302 gggagcttctatgatgcagtcagaaaactgactttt 337  Q
    ||||||||||| ||||||||||||||||||||||||    
T  29173922 gggagcttctacgatgcagtcagaaaactgactttt 29173887  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 25184539 - 25184503
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgactttt 337  Q
    |||||||||||||| ||||||||||||||||||||||    
T  25184539 agggagcttctatggtgcagtcagaaaactgactttt 25184503  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 33816301 - 33816337
Alignment:
Q  301 agggagcttctatgatgcagtcagaaaactgactttt 337  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  33816301 agggagcttctacgatgcagtcaggaaactgactttt 33816337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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