View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9229_low_8 (Length: 350)
Name: NF9229_low_8
Description: NF9229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9229_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 26766452 - 26766102
Alignment:
| Q |
1 |
tagatgactcataattttgatgcagatttaaaatatgaaccatacaatcttgatcaaataatcaatacatcataatccagaaatcgattttgtttatttg |
100 |
Q |
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| T |
26766452 |
tagatgactcataattttgatgcagatttaaaatatgaaccatacaatcttgatcaaataatcaatacatcataatccagtaatcaattttgtttatttg |
26766353 |
T |
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| Q |
101 |
attgcatcaaatgtgattctttggcgataggaaaccgaaattcaagnnnnnnnn-catttgggttttgatcagtgttaatttcatatttggattctatgt |
199 |
Q |
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| T |
26766352 |
attgcatcaaatgtgattctttggcgataggaaaccgaaattcaattttttttttcatttgggttttgataggtgttaatttcatatttggattctatgt |
26766253 |
T |
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| Q |
200 |
aatcacaaatttcaacaaatgtctatataaaccgtcatataatgatcgatagcttatattccaattagtattttgaatatgatttggtaaatttaaaa-a |
298 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26766252 |
aatcacaaatt-caacaaatgtctatataaaccgtcatataatgatcgatagcttatattccaattagtattttgaatatgatttggtaaatttaaaata |
26766154 |
T |
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| Q |
299 |
taaactatcctatctttatctaatggttgaaatataaggatcccaacaacca |
350 |
Q |
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| T |
26766153 |
tgaactatcctatctttatctaatggttgaaatataacgatcccaacaacca |
26766102 |
T |
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