View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9230_low_10 (Length: 233)

Name: NF9230_low_10
Description: NF9230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9230_low_10
NF9230_low_10
[»] chr6 (29 HSPs)
chr6 (16-102)||(26863758-26863844)
chr6 (16-102)||(27681134-27681220)
chr6 (16-97)||(27696515-27696596)
chr6 (34-102)||(31286726-31286794)
chr6 (34-97)||(26648637-26648700)
chr6 (34-97)||(26754605-26754668)
chr6 (16-99)||(27590907-27590990)
chr6 (16-99)||(27675504-27675587)
chr6 (16-102)||(26886256-26886342)
chr6 (16-102)||(27529199-27529285)
chr6 (16-102)||(27609044-27609130)
chr6 (16-102)||(28794559-28794645)
chr6 (16-102)||(28788438-28788524)
chr6 (16-101)||(26825974-26826059)
chr6 (16-97)||(27716424-27716505)
chr6 (16-92)||(26658139-26658215)
chr6 (16-92)||(26764110-26764186)
chr6 (16-99)||(27704141-27704224)
chr6 (16-102)||(27425520-27425606)
chr6 (33-102)||(26804666-26804735)
chr6 (16-92)||(25485207-25485283)
chr6 (34-102)||(26625420-26625488)
chr6 (34-102)||(26731397-26731465)
chr6 (16-92)||(25513035-25513111)
chr6 (16-92)||(25547128-25547204)
chr6 (185-216)||(26863644-26863675)
chr6 (16-92)||(26145013-26145089)
chr6 (16-92)||(26637716-26637792)
chr6 (16-92)||(26743682-26743758)
[»] chr1 (3 HSPs)
chr1 (16-102)||(28125617-28125703)
chr1 (16-102)||(28130655-28130741)
chr1 (33-97)||(266272-266336)
[»] chr4 (8 HSPs)
chr4 (16-102)||(18677520-18677606)
chr4 (16-102)||(18697363-18697449)
chr4 (17-102)||(18653439-18653524)
chr4 (17-102)||(18687576-18687661)
chr4 (16-102)||(18722034-18722120)
chr4 (16-102)||(18729456-18729542)
chr4 (35-93)||(5089020-5089078)
chr4 (16-102)||(18075949-18076035)
[»] scaffold0277 (2 HSPs)
scaffold0277 (16-102)||(11578-11664)
scaffold0277 (16-102)||(2615-2701)
[»] scaffold0349 (1 HSPs)
scaffold0349 (16-97)||(15440-15521)
[»] scaffold1870 (1 HSPs)
scaffold1870 (16-102)||(966-1052)
[»] scaffold0419 (1 HSPs)
scaffold0419 (16-102)||(9685-9771)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-102)||(61757-61843)
[»] chr8 (2 HSPs)
chr8 (16-97)||(22023431-22023512)
chr8 (34-97)||(29271781-29271844)
[»] chr2 (1 HSPs)
chr2 (59-102)||(17991186-17991229)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 26863844 - 26863758
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26863844 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 26863758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 27681220 - 27681134
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||||||   |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||| ||||    
T  27681220 gagacatcgggtatatgtgttaaatattcacaatagtccaatgtcaagactttcatattctgaaacttctgcatacacacaaggaag 27681134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 27696515 - 27696596
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||| |||||||   |||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  27696515 gagacatcgggtatatgtgttaaatattcacaatcgtccaatgtcaagattttcatattctggaacttctgcataaacacaa 27696596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 31286794 - 31286726
Alignment:
Q  34 gttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||| ||||    
T  31286794 gttaaatattcacaatcgtccaatgtcaagactttcatattctggaacttctgcgtaaacacaaggaag 31286726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 26648700 - 26648637
Alignment:
Q  34 gttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  26648700 gttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaa 26648637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 26754668 - 26754605
Alignment:
Q  34 gttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  26754668 gttaaatattcacaacagttcaatgtcaagactttcatattctggaacttctgcataaacacaa 26754605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27590907 - 27590990
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaag 99  Q
    ||||||| |||||||   |||||||||||||||| |||||||||||||| | |||||| || ||||||||||||||||||||||    
T  27590907 gagacatcgggtatatgtgttaaatattcacaatggtccaatatcaagattgtcatatcctggaacttctgcataaacacaaag 27590990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27675504 - 27675587
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaag 99  Q
    ||||||| |||||||   |||||||||||||||| |||||||||||||| | |||||| || ||||||||||||||||||||||    
T  27675504 gagacatcgggtatatgtgttaaatattcacaatggtccaatatcaagattgtcatatcctggaacttctgcataaacacaaag 27675587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 26886342 - 26886256
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||||||||| |  ||||||||||||||||| ||| ||| |||||||||||||    |||||||||||||||||||||||||||    
T  26886342 gagacattgggtacatgggttaaatattcacaattgtcaaatgtcaagactttcatgaagtcgaacttctgcataaacacaaagaag 26886256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 27529199 - 27529285
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  ||||||||||||||||| || ||||||||||||||||||||  || ||||||||||||||||| ||||||    
T  27529199 gagacatccggtatatgggttaaatattcacaattgttcaatatcaagactttcatatcttcaaacttctgcataaacacgaagaag 27529285  T

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Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 27609044 - 27609130
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||||||   ||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||| |||||| ||||    
T  27609044 gagacatcgggtatatgtgttaaatattcacaatagttcaatgtcaagactttcatattctgaaacttctgcatacacacaaggaag 27609130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 28794645 - 28794559
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  ||||||||||||||| | ||||||| ||||||||||||| |||| |||||||||||||||||||| ||||    
T  28794645 gagacatcaggtatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaacttctgcataaacacaaggaag 28794559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 28788524 - 28788438
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  ||||||||||||||| | ||||||| ||||||||||||| |||| ||| |||||||||||||||| ||||    
T  28788524 gagacatcaggtatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaaattctgcataaacacaaggaag 28788438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 26826059 - 26825974
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaa 101  Q
    ||||||| ||||||   |||||||| || ||| | |||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26826059 gagacatcgggtatgtgggttaaatgttgacacttgtccaatgaaaagactttcatattctcgaacttctgcataaacacaaagaa 26825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 27716424 - 27716505
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||| |||||||   |||||||||| |||   ||||||||||||||||||||||| || ||||||||||||||||||||    
T  27716424 gagacatcgggtatatgtgttaaatatttacatcggtccaatatcaagactttcatatcctggaacttctgcataaacacaa 27716505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26658215 - 26658139
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    |||||||||||||||  ||||||||||||||||| ||||||| ||| || ||||||||| | ||||| |||||||||    
T  26658215 gagacattgggtatatgggttaaatattcacaatcgtccaatgtcatgaatttcatattattgaactcctgcataaa 26658139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26764186 - 26764110
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    |||||||||||||||  ||||||||||||||||| ||||||| ||| || ||||||||| | ||||| |||||||||    
T  26764186 gagacattgggtatatgggttaaatattcacaatcgtccaatgtcatgaatttcatattattgaactcctgcataaa 26764110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 27704141 - 27704224
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaag 99  Q
    ||||||| |||||||   |||||||||| ||||| ||||||| |||||||| |||||| |  ||||||||||||||||||||||    
T  27704141 gagacatcgggtatatgtgttaaatatttacaatggtccaatgtcaagactgtcatatccgggaacttctgcataaacacaaag 27704224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 27425520 - 27425606
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||| || || |||||| || ||||| ||| |||||||| |||||||||||||| | |||||||||||||||| |||||    
T  27425520 gagacatcgggtgtatagattaaatcttgacaattgtcgaatatcaacactttcatattctcaagcttctgcataaacacacagaag 27425606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 26804735 - 26804666
Alignment:
Q  33 ggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||  || ||||||| |||||||||||||||| | ||| |||||||||||||||| ||||    
T  26804735 ggttaaatattcattatcgtccaatgtcaagactttcatattttggaaattctgcataaacacaaggaag 26804666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 25485283 - 25485207
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    ||||||| |||||||  |||||||||||||||| | |||||| |||||||||||||||  | ||||| |||||||||    
T  25485283 gagacatcgggtatatgggttaaatattcacaaaaatccaatgtcaagactttcatatagttgaactcctgcataaa 25485207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 26625488 - 26625420
Alignment:
Q  34 gttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||||| | ||||||| | || ||||||||||||| |||||||||||||||||||| ||||    
T  26625488 gttaaatgttcacattcgtccaatgttaatactttcatattctggaacttctgcataaacacaaggaag 26625420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 26731465 - 26731397
Alignment:
Q  34 gttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||||| | ||||||| | || ||||||||||||| |||||||||||||||||||| ||||    
T  26731465 gttaaatgttcacattcgtccaatgttaatactttcatattctggaacttctgcataaacacaaggaag 26731397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 25513111 - 25513035
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    ||||||| |||||||  |||||||||||||||| | | |||| |||||||||||||||  | ||||| |||||||||    
T  25513111 gagacatcgggtatatgggttaaatattcacaaaaattcaatgtcaagactttcatatagttgaactcctgcataaa 25513035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 25547204 - 25547128
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    |||||||  ||||||  ||||||||||||||||   ||||||||||||||||||||||  | ||||| |||||||||    
T  25547204 gagacatcaggtatatgggttaaatattcacaaagatccaatatcaagactttcatatagttgaactcctgcataaa 25547128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 216
Target Start/End: Complemental strand, 26863675 - 26863644
Alignment:
Q  185 cacttgccttgttcaaaaaacaagatgataga 216  Q
    ||||||||||||||||||||||||||||||||    
T  26863675 cacttgccttgttcaaaaaacaagatgataga 26863644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26145089 - 26145013
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    ||||||| |||||||  ||||||||||  | |||||| |||| |||||||||||||||  | ||||| |||||||||    
T  26145089 gagacatcgggtatatgggttaaatatcgagaatagttcaatgtcaagactttcatatagttgaactcctgcataaa 26145013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26637792 - 26637716
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    ||||||| |||||||   |||||||| | ||||| || |||| |||||||||||||||  | |||||||||||||||    
T  26637792 gagacatcgggtatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcataaa 26637716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26743758 - 26743682
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaa 92  Q
    ||||||| |||||||   |||||||| | ||||| || |||| |||||||||||||||  | |||||||||||||||    
T  26743758 gagacatcgggtatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcataaa 26743682  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 28125617 - 28125703
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||||||  |||||||||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  28125617 gagacatcgggtatatgggttaaatattcacaaaagttcaaagtcaagactttcatattctcgaacttctgcataaacacaaagaag 28125703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 28130655 - 28130741
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||  ||||||||||| |||  ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  28130655 gagacattgggtatattggttaaatatttacagaagttcaatgtcaagactttcgtattctcgaacttctgcataaacacaaagaag 28130741  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 266272 - 266336
Alignment:
Q  33 ggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||||||||||||| ||| ||||||||||| ||||||| || ||||||||||||| ||||||    
T  266272 ggttaaatattcacaatggtctaatatcaagacattcatatcctggaacttctgcatacacacaa 266336  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 18677520 - 18677606
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||  ||||||||||  ||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  18677520 gagacattgggtatatgggttaaatatagacaatagtccaatgtcaagactttcatatcctcaaacctctgcataaacacaaagaag 18677606  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 18697363 - 18697449
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||  ||||||||||| ||||| ||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  18697363 gagacattgggtatatgggttaaatattgacaattgtccaatgtcaagactttcatatcctcaaacctctgcataaacacaaagaag 18697449  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 18653439 - 18653524
Alignment:
Q  17 agacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||||||||||  ||||||||||| ||||| ||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  18653439 agacattgggtatatgggttaaatattgacaattgtccaatgtcaagactttcatatcctcaaacctctgcataaacacaaagaag 18653524  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 18687576 - 18687661
Alignment:
Q  17 agacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||||||||||  ||||||||||| ||||| ||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  18687576 agacattgggtatatgggttaaatattgacaattgtccaatgtcaagactttcatatcctcaaacctctgcataaacacaaagaag 18687661  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 18722034 - 18722120
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||  ||||||||||| ||| | ||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  18722034 gagacattgggtatatgggttaaatattgacacttgtccaatgtcaagactttcatatgctcaaacctctgcataaacacaaagaag 18722120  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 18729456 - 18729542
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||||||||||  ||||||||||| ||| | ||||||| ||||||||||||||| ||| ||| |||||||||||| |||||||    
T  18729456 gagacattgggtatatgggttaaatattgacacttgtccaatgtcaagactttcatatcctcaaacctctgcataaacaaaaagaag 18729542  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 5089020 - 5089078
Alignment:
Q  35 ttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaac 93  Q
    ||||||||||||||||||| ||| |||| | ||||| ||||||||||||||||||||||    
T  5089020 ttaaatattcacaatagtcaaatttcaaaattttcagattctcgaacttctgcataaac 5089078  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18076035 - 18075949
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||| || || |||||| || ||||| ||| |||||||| |||||||||||||| | |||||||||||||||| |||||    
T  18076035 gagacatcgggtgtatagattaaatcttgacaattgtcgaatatcaacactttcatattctcaagcttctgcataaacacacagaag 18075949  T

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Target: scaffold0277 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 11578 - 11664
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  ||||||||||||||| | ||||||| ||||||||||||| |||| ||| |||||||||||||||| ||||    
T  11578 gagacatcaggtatatgggttaaatattcacacttgtccaatgtcaagactttcatgttctggaaattctgcataaacacaaggaag 11664  T

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Target: scaffold0277; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 2615 - 2701
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  |||||||||||||||   ||||||| |||||| |||||| |||| |||||||||||||||||||| ||||    
T  2615 gagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaag 2701  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 15521 - 15440
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||| |||||||   |||||||||| |||   ||||||||||||||||||||||| || ||||||||||||||||||||    
T  15521 gagacatcgggtatatgtgttaaatatttacatcggtccaatatcaagactttcatatcctggaacttctgcataaacacaa 15440  T

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Target: scaffold1870 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 1052 - 966
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  |||||||||||||||   ||||||| |||||| |||||| |||| |||||||||||||||||||| ||||    
T  1052 gagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaag 966  T

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Target: scaffold0419 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 9771 - 9685
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    |||||||  ||||||  |||||||||||||||   ||||||| |||||| |||||| |||| |||||||||||||||||||| ||||    
T  9771 gagacatcaggtatatgggttaaatattcacacctgtccaatgtcaagattttcatgttctggaacttctgcataaacacaaggaag 9685  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 61843 - 61757
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||| |||| || || |||||| || ||||| ||| |||||||| |||||||||||||| | |||||||||||||||| |||||    
T  61843 gagacatcgggtgtatagattaaatcttgacaattgtcgaatatcaacactttcatattctcaagcttctgcataaacacacagaag 61757  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 22023512 - 22023431
Alignment:
Q  16 gagacattgggtatacaggttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||||||  ||||| |||| ||||||||||||| ||   |  |||||||||||||||||| ||||||||||||||||||||    
T  22023512 gagacattacgtatataggtaaaatattcacaatggtatgacgtcaagactttcatattctggaacttctgcataaacacaa 22023431  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 29271781 - 29271844
Alignment:
Q  34 gttaaatattcacaatagtccaatatcaagactttcatattctcgaacttctgcataaacacaa 97  Q
    ||||| ||||||||   ||||||||||||||||||||||| ||  |||||||||||||||||||    
T  29271781 gttaagtattcacatcggtccaatatcaagactttcatatcctgaaacttctgcataaacacaa 29271844  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 17991186 - 17991229
Alignment:
Q  59 tcaagactttcatattctcgaacttctgcataaacacaaagaag 102  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  17991186 tcaagactttcatattctcgaacttctgcataaaatcaaagaag 17991229  T

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