View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9230_low_2 (Length: 359)
Name: NF9230_low_2
Description: NF9230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9230_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 18564180 - 18563839
Alignment:
| Q |
1 |
accagcataggagctgtcgcaatgaaccattcaccagaaaggttgcataataccttatccctcgcgttttcacaaagccgtcgaagctggagacctatga |
100 |
Q |
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| T |
18564180 |
accagcataggagctgtcgcaatggaccattcaccagaaaggttgcataataccctatccctcacgttttcgcaaagccgtcgaagctggagatctatga |
18564081 |
T |
|
| Q |
101 |
cggcaccaccgatctggacgagcacatagaacacctagataccgtcctcaattaccaccaggtgcgaggcgcagtgaagtgcaagttgtttgtgttgaca |
200 |
Q |
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| T |
18564080 |
cggcaccattaatccggacgagcacatagaacacctagataccatccttaattaccatcaggtgggaggcgcggtgaagtgcaagttgtttgtgttgaca |
18563981 |
T |
|
| Q |
201 |
ctaaaaggtgcctccatgacttggttaaagggcaagaagaggagtctatcaactcttggagagaatagtgtgacgaatttacttcccactttagtgtgag |
300 |
Q |
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| T |
18563980 |
ctaaaaggtgcctccattacttggttaaagggaaagaagacgattctatcaactcttggagagaattgtgcgacgaatttacttcccactttactatgag |
18563881 |
T |
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| Q |
301 |
gcagaaacaaccaaaaaccatggcaacattgaacgccatagt |
342 |
Q |
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| T |
18563880 |
gcagaaacaaccaaaatccatggcaacattgaacgccatagt |
18563839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 21142432 - 21142238
Alignment:
| Q |
129 |
gaacacctagataccgtcctcaattaccaccaggtgcgaggcgcagtgaagtgcaagttgtttgtgttgacactaaaaggtgcctccatgacttggtt-a |
227 |
Q |
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| T |
21142432 |
gaacacatagataccgtcctcgattaccaccaggtgcgaggtgtggtgaaattccaattgtttgttttgacgctaaaaggtgccgccataacttggttca |
21142333 |
T |
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| Q |
228 |
aagggcaagaagaggagtctatcaactcttggagagaatagtgtgacgaatttacttcccactttagtgtgaggcagaaacaaccaaaaaccatg |
322 |
Q |
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| T |
21142332 |
aggggctggaggataactctatcaactcctgtagagagtcgtgcgacgaatttacttctcactttactgcgagacggaagcaaccataaaccatg |
21142238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 293
Target Start/End: Original strand, 17145456 - 17145621
Alignment:
| Q |
129 |
gaacacctagataccgtcctcaattaccaccaggtgcgaggcgcagtgaagtgcaagttgtttgtgttgacactaaaaggtgcctccatgacttggttaa |
228 |
Q |
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| T |
17145456 |
gaacacctggatatcgtccttgattaccaccaagcgtgaggcgcggtgaagtgcaaactattcgccttgacactgaaaggcgccaccatgacttggttca |
17145555 |
T |
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| Q |
229 |
aggg-caagaagaggagtctatcaactcttggagagaatagtgtgacgaatttacttcccacttta |
293 |
Q |
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| T |
17145556 |
agggtctggaagataactctatcaactcatggaaagaactgtgcaacgaattcactacccacttta |
17145621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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